| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0735 |
|---|
| Symbol | |
|---|
| ID | 4173086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 836214 |
|---|
| End bp | 837404 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638053737 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_660317 |
|---|
| Protein GI | 109897062 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAAA AAATAATCGA TATGTTCAAA GGAAGAAGAT TGGCCGCTCC ATTAGTTAAT
TTGGAGCATA AGGATATGTT TCGTCTTGCA ATGGAGCATT CAGCCATAGG TATGGCGTTA
ATATCACCAG ACGGTACCTG GCTAAAAGTC AACAAAGCCA TATGCGATAT CCTTGGTTAC
AGCGAGAAAG AACTGCTTAA AATAGATTTC CAATCTATTA CTCATCCTGA GGATCTACAA
ACTGACCTTA CTTTTCTTAA GCAAATACTT GCCGGTGACA TACAAACGTA CAACATGGAA
AAACGTTACT TCCATAAAAG TGGTCGATTG ATTTGGGCTA AGTTGACGGT GTCTTTAGTA
AGAGACAAAG CACAACACCC TCTGTACTTC ATTTCACAAA TTCAAGACAT TACGTTGCAG
AAAAAAGCCT CTGTAGATTT GTTGCAAGAC AAGCAAGAAA TGGAGGAGTT TGCCTATCGA
CTTACTCATG ATTTACGGTC GCCATTGAGC TCTATGGGCT ATCTTATGAA GATGATCACA
CAACAGATTA GTAACGGTGA TTTACAGAGT GCCTTGAAGA CAGTTCAAAC CTCTCACGAC
GGGCTCTCTA AATTAAGTGA TTTGGTCAGC GGTGTTTTGG ATGTGAGCAA AGTTAAGCTG
CAAGAGGAGA GCTCCCAACC TATTGATGTG TCAGTGATCG TGTGTGAAAC ACTGGCCGCT
CTGAGTAATA TGGAAAACTT CGAACGCTTA GACATTGAGA CACGTTTTGA GTACATAGGA
ACAATCAACA CTCAGCCCTA TAAATTTACC CAAATAATTG ACAACTTCAT TTCCAATGCG
ATTAAGTACC AAGACACGGG TAAGGCCAAT TCTTTTATTC GCGTCTTAAC CTACAAGCTG
AACCAAGAGT TCGTGTTGGA GGTACAAGAT AACGGTTTGG GTATTGATGA GGTGTATCGA
AAAAAACTAT TTCAAATGTT TGAACGCTTC CATCCTGCGG CTTCAGTGGG TACAGGGCTT
GGTCTATACA TGGTTAAAAA AAGTGCAGAT TTAATTGGCG CTAAACTGGT TTATGCGGTT
CCTGATAATG GTGAGGGGTC CATTTTTCGT GTGACGCTAC CACTGGATAA CATACCTGCT
CTTACTTTAC CTGATAGCGA GATAAAAACG TCGCAACAGT TTGTTCAATA A
|
|---|
| Protein sequence | MVKKIIDMFK GRRLAAPLVN LEHKDMFRLA MEHSAIGMAL ISPDGTWLKV NKAICDILGY
SEKELLKIDF QSITHPEDLQ TDLTFLKQIL AGDIQTYNME KRYFHKSGRL IWAKLTVSLV
RDKAQHPLYF ISQIQDITLQ KKASVDLLQD KQEMEEFAYR LTHDLRSPLS SMGYLMKMIT
QQISNGDLQS ALKTVQTSHD GLSKLSDLVS GVLDVSKVKL QEESSQPIDV SVIVCETLAA
LSNMENFERL DIETRFEYIG TINTQPYKFT QIIDNFISNA IKYQDTGKAN SFIRVLTYKL
NQEFVLEVQD NGLGIDEVYR KKLFQMFERF HPAASVGTGL GLYMVKKSAD LIGAKLVYAV
PDNGEGSIFR VTLPLDNIPA LTLPDSEIKT SQQFVQ
|
|---|
| |