Gene Patl_0678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0678 
Symbol 
ID4172653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp780204 
End bp780797 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content39% 
IMG OID638053680 
ProductXRE family transcriptional regulator 
Protein accessionYP_660260 
Protein GI109897005 
COG category[K] Transcription 
COG ID[COG1476] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATCATTA TAATTGATCA CGTTAAATCA AATGTCAAAC AGTTGACTTT AAAATATTCC 
TATTTTTTAA ATGGATGTTA TTGTTCAGTG ATGAATACAG GTGATTTAGT TCGACTAGTG 
AGGGGGCACA ACGGCCTTTC ACAAACTGAC TTTGCTAAGA AAATAGGTGC TTCTAGGTCA 
TCCGTTAACC AGTGGGAAAA TAATTACCAC AAACCTAAGC TCGAAAATGT TTTGACCATA 
ATTGAGCATT TCAAACCAAA ACAGAGTTTA TGCGACCGCT TACTGGCCAG CGTCGGCCAC 
TTTTCAGATG ACACGTTCGG TCTATTGAGC AGCAACTCTC TACTCAAAAA TCAAATTGAA 
TCTGCTTCTT CAAAATCTTC TATTGATTCT GAAAAGGTCA CATCTGAAGT CGTTAATGCG 
CTTTTCGATA TGGTGATTGC TGGTGAGATT ACGTTTCGCA AGGGAGCGGA TCCGAAAGTT 
ACTGCAGAAC ATATATACAG AAAGTTGGTC AGCAGTGGCT CCATAGAACT CGCATCAAAT 
GCTGTTTATC TCACCCCTGA GGAAAATGCT TCTTTAAATT TAAAACAACG CTAA
 
Protein sequence
MIIIIDHVKS NVKQLTLKYS YFLNGCYCSV MNTGDLVRLV RGHNGLSQTD FAKKIGASRS 
SVNQWENNYH KPKLENVLTI IEHFKPKQSL CDRLLASVGH FSDDTFGLLS SNSLLKNQIE 
SASSKSSIDS EKVTSEVVNA LFDMVIAGEI TFRKGADPKV TAEHIYRKLV SSGSIELASN 
AVYLTPEENA SLNLKQR