| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0671 |
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| Symbol | |
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| ID | 4173326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 773232 |
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| End bp | 774362 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053674 |
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| Product | type IV pilus assembly protein PilM |
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| Protein accession | YP_660254 |
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| Protein GI | 109896999 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGTTTAACA AATTATTGGC TAAAAAAGCG CAGCACCTTA TTGGACTCGA CATCGGCACC
CGCTATGTTA AGGCCGTACT GCTTGAGCAA ACCAAGCAAA GCACCACTGT GCTAGCCATC
GCTTGCGAGC CAATCAATGG CAATGCTTTT GCAGAAAGGG AAGTTAAAGA TTACGAAGCA
CTAAGCCAAG CATTGAAAAA AGTAAAACTT AGCCTAAAAA CGAAAGTGAA ACAGGTGGTC
ATAGCCGTAT CTGGACCAGC CGTTATTAAT AAACTTGCTT ACATGGACGA CGATTTAACG
GATGTTGAAC TTGAAAGCCA AATTGAGCTA GAAGCCGACA GCTTGATCCC GTACCCTCTT
GAAGAGATTT ACTTAGATTT TGAAAGGCTC GCTCCCAGCG TTAATTACTC GGGAAAAGTG
GAAGTGCTAC TCAGCGCCGT TCATAAAGAC ATGCTTGATT CTCGGCTTAC ACTTTTAAAC
GAAGTGGGCT TTGAACCCAA AATTTCAGAT GTTGAAGTAT ACGCTCTCGC CAACGCATTG
ATGCACTTTT CCCATCAACC ATCGCCCGTC AAAACACCGC CCCCTAACGA TAGCGATATC
ATATCTAGTG ATGAGCAAAG CAAAGTAAAA AATGAAGTTC GATGCTGTAT TAACATTGGA
GCATCGCAAA TGCAGTTTTG CGCCGTTACA GATGACAACA TTCTGTACAC CAAGGAGCAC
AACTTTGGTT TTGATGCGCT TACCCAAGAC AGCTGCTCGA ACTTTAATTT AACTCGGGTT
GAGTACGATC AAAAGCTGGT GTCCCATTCT TTACCGGTAA ATTGGCAGCA AGAATGTTAC
GTACTTTTCC ATGCCAACTT ACAGCAGCAT ATCACCCGGG CAATTCAAAT GTATGTGAGC
GCATCCCACC AGCCTTCTCC TAAGCACCTT TTCATTTGTG GGGCAATTGG CCCATTTCCC
GCTTTAGCTG ATGAGCTTGC CCAAGACTTA GGTATTAGTG TGAATGTTTT TAATCCCTTA
GCTGATATGC AAAGCGATGA AAAGAGTGCC AAGCTTATCG CCGCTCACGG AGCTAACTTT
GCCATTGCCA CCGGATTGGC ATTCAGGAGT TTTTCACCTT GCCACATATA A
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| Protein sequence | MFNKLLAKKA QHLIGLDIGT RYVKAVLLEQ TKQSTTVLAI ACEPINGNAF AEREVKDYEA
LSQALKKVKL SLKTKVKQVV IAVSGPAVIN KLAYMDDDLT DVELESQIEL EADSLIPYPL
EEIYLDFERL APSVNYSGKV EVLLSAVHKD MLDSRLTLLN EVGFEPKISD VEVYALANAL
MHFSHQPSPV KTPPPNDSDI ISSDEQSKVK NEVRCCINIG ASQMQFCAVT DDNILYTKEH
NFGFDALTQD SCSNFNLTRV EYDQKLVSHS LPVNWQQECY VLFHANLQQH ITRAIQMYVS
ASHQPSPKHL FICGAIGPFP ALADELAQDL GISVNVFNPL ADMQSDEKSA KLIAAHGANF
AIATGLAFRS FSPCHI
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