| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0617 |
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| Symbol | |
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| ID | 4174105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 712878 |
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| End bp | 714923 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053620 |
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| Product | ATP-dependent DNA helicase RecQ |
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| Protein accession | YP_660200 |
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| Protein GI | 109896945 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAACA CCACTGTCGA TATCGCTAAT GATCAGGGGG CACAAAATGC CAGCCTGGCT
AACACTTTTG GTTTTGATCA ATTTCGTGGC GGCCAGCAGC AGGTTGTTAG TCAGCTACTT
AACGGCCAAT CTTCCCTAGC TATTTTTCCC ACAGGGTCGG GTAAATCTTT GTGCTATCAA
TTTTGTGCAC TGCACCTACC CCATTTGACC CTAGTGGTAT CACCACTATT AGCGTTGATG
AAAGACCAGT TAGCATTTTT ACAATCCAAG GGCATTGCGG CAGGCAGCAT TGATTCAACC
TTGAGTCCTG ATGAGCAGCG CAGCACTATG GAGCGCGTGC GAAGCGGCGA GATAAAAATA
TTGATGGTCT CAGTTGAGCG TTTTAAGAAT GAGCGCTTTC GTCAGTTTAT CGACAGTGTT
GCTGTATCCA TGCTGGTTGT TGATGAGGCT CACTGCATTT CTGAGTGGGG GCATAATTTT
CGACCAGATT ATCTGAAACT GCCGGATTAT CGAGCCCAGT TAAATATCCC TTTGGTATTA
CTGCTAACAG CAACGGCTAC CAAAAAAGTC AAATTAGACA TGGCCAAACG GTTTGCCATT
GAGCCGCAGC ACGTAGTGCA AACCGGCTTC TACCGCAAAA ACTTAGACCT GCACGTTAGC
GCCACTCCTG AGCGAGAAAA AAATCAGACA CTTATACAGA TTATCCAAGC GCAACAAGGC
TGCGGGATTG TGTATGTCAC CTTGCAGCAT AGCGCCGAAC AAGTGGCGCA GCGTTTAGCG
GCCGACGGGG TGTCCGCTAA AGCCTATCAC GCTGGGTTAG GTGATGAGGT TCGCCAGCGG
GTACAGCAAG ACTTTATGGA GGGGCGTATT CAAGTCGTTG TGGCCACCAT TGCATTTGGC
ATGGGGATCG ACAAGTCAGA TATTCGCTTT GTCGTGCATT ACGATTTACC CAAGTCTATT
GAGAATTACA GCCAGGAAAT CGGCCGAGCA GGGCGCGACG GCCAACTTTC TCACTGTATT
ACACTGGGAA ATTTGGATGG TCTACACACA GTGGAAAATT TTGTTTATGG CGATACGCCT
GAATTGCAGG GGATCCAAAT TTTACTGGAC GATATTCGTC AAGGGACACA AAATCACATT
GCTAAACCCA TAGGGCAACA CGCGACTCAA CACGAAAATA ATGGGGCTAC TGAATTTGCC
CATGCTAGCC AGTGGGAGCT GCAAATAAAC GGCCTTTCTA CCCTTAGTAA TATTCGCCAA
CTCCCATTAA AAACCCTACT GGTGCAGCTT GAACTGATGG GGATTGTGCG CCCGCAGTAT
GCATATTTTG CCGACGTGCG TTTTAAATTT CTGCAGGACA AAGCAGATGT ACTGGCGCGC
TTTGACGAAA ACCGCCAAGC TTTTTTAACC AGTGTGTTCG CCAATACCGA CTTTAAAAAG
ATATGGGGTA GTTTGAATTT TGATAGCTTA TTTGAACAAA CTGGGGCCGA GCGCGCTCGA
GTCGTAGCTG CGTTGGAGTA TTTAGCACAA AACCAACTCA TTGAATTGCA AACTAAGCAA
ATCACTGAAG TGTTTCAGGT GGATACAGAT AAGCTAAACC AGCCTGAATT AGCCCAAACA
TTGCACGCCT ATTTTACTGA TAAAGAACAG AAAGAGTTGC AACGTATTGC GATGCTGGTG
CGCTTTTTTC AGTTAGATAA ATGCCTTAGC CATAACTTGT CACGTTACTT TGACGATCTC
AATACCCCAG AAAAATGCGG TCATTGCAGT GTATGTCGTG GAGAAGTGGC TCACCTGCAT
GTCACCAGTG AAGTACCTGA GATAGATGAA CTTGCCGTGG CTGAAGCCAT GCAGGCGTTG
GCAAAGCACA TAGAAGGAAA AGTGGAGTAT CGCCTAAGTG AAGATACCTA TTGCCGATTT
TTAACCGGTA TGACGATGCC GTTATTTACC GGTTTAAAGA TACGCCAAGT GCGGGGTTAC
GCTATCTGTG AAAAGAGTCG CTACCCAGCG ATAAAAGAGG TCGTACGTCG CTTTATAGTA
GAATAA
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| Protein sequence | MQNTTVDIAN DQGAQNASLA NTFGFDQFRG GQQQVVSQLL NGQSSLAIFP TGSGKSLCYQ
FCALHLPHLT LVVSPLLALM KDQLAFLQSK GIAAGSIDST LSPDEQRSTM ERVRSGEIKI
LMVSVERFKN ERFRQFIDSV AVSMLVVDEA HCISEWGHNF RPDYLKLPDY RAQLNIPLVL
LLTATATKKV KLDMAKRFAI EPQHVVQTGF YRKNLDLHVS ATPEREKNQT LIQIIQAQQG
CGIVYVTLQH SAEQVAQRLA ADGVSAKAYH AGLGDEVRQR VQQDFMEGRI QVVVATIAFG
MGIDKSDIRF VVHYDLPKSI ENYSQEIGRA GRDGQLSHCI TLGNLDGLHT VENFVYGDTP
ELQGIQILLD DIRQGTQNHI AKPIGQHATQ HENNGATEFA HASQWELQIN GLSTLSNIRQ
LPLKTLLVQL ELMGIVRPQY AYFADVRFKF LQDKADVLAR FDENRQAFLT SVFANTDFKK
IWGSLNFDSL FEQTGAERAR VVAALEYLAQ NQLIELQTKQ ITEVFQVDTD KLNQPELAQT
LHAYFTDKEQ KELQRIAMLV RFFQLDKCLS HNLSRYFDDL NTPEKCGHCS VCRGEVAHLH
VTSEVPEIDE LAVAEAMQAL AKHIEGKVEY RLSEDTYCRF LTGMTMPLFT GLKIRQVRGY
AICEKSRYPA IKEVVRRFIV E
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