| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0600 |
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| Symbol | rpsL |
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| ID | 4174088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 690833 |
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| End bp | 691207 |
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| Gene Length | 375 bp |
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| Protein Length | 124 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053603 |
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| Product | 30S ribosomal protein S12 |
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| Protein accession | YP_660183 |
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| Protein GI | 109896928 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0048] Ribosomal protein S12 |
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| TIGRFAM ID | [TIGR00981] ribosomal protein S12, bacterial/organelle |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00583114 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAACAG TTAACCAGTT AGTGCGCAAG CCACGCCAAA AGCCCGATGC GAAGAGCAAC
GTAGCGGCAT TGCAGGCCTG TCCACAACGC CGTGGTGTAT GTACTCGTGT ATATACCACC
ACTCCAAAGA AGCCAAACTC TGCATTGCGT AAAGTTTGTC GTGTTCGTTT AACCAACGGT
TTTGAAGTTT CTTCATACAT CGGTGGTGAA GGCCATAACC TACAAGAGCA CAGTGTTGTT
CTTATCCGTG GTGGTCGTGT TAAAGATTTA CCAGGTGTTC GTTACCACAC TGTTCGCGGT
ACATTAGACT GCGCAGGCGT AAGTTCACGT AAACAAGCCC GTTCTAAGTA CGGTGCAAAA
AGGCCTAAGT CTTAA
|
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| Protein sequence | MATVNQLVRK PRQKPDAKSN VAALQACPQR RGVCTRVYTT TPKKPNSALR KVCRVRLTNG
FEVSSYIGGE GHNLQEHSVV LIRGGRVKDL PGVRYHTVRG TLDCAGVSSR KQARSKYGAK
RPKS
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