| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0599 |
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| Symbol | |
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| ID | 4174087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 686436 |
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| End bp | 690623 |
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| Gene Length | 4188 bp |
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| Protein Length | 1395 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053602 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_660182 |
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| Protein GI | 109896927 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.275775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTTAAACAA CAACACAAGT CCGAAGAATT CGATAATATT
CGAATTGGTC TTGCGTCACC TGACATGATC CGTTCATGGT CTTTCGGTGA AGTTAAGAAG
CCAGAAACCA TTAACTACCG TACTTTCAAG CCTGAGCGTG ATGGCTTGTT CTGTGCGCGT
ATTTTTGGAC CGGTTAAAGA CTACGAGTGT TTGTGTGGCA AATATAAGCG CCTTAAACAC
CGTGGTGTTA TATGTGAAAA ATGTGGCGTT GAAGTAACGT TAACCAAAGT ACGCCGTGAG
CGTATGGGCC ACATTGAATT GGCAAGTCCA GTTGCACATA TTTGGTTCCT TAAATCATTA
CCGTCACGTA TCGGTTTGAT GCTTGATATG ACACTTCGTG ATATCGAACG TGTGCTTTAT
TTCGAATCAT ATGTTGTTGC CGAACCTGGC ATGACAACGC TTGAGCGCAG CCAACTTCTT
TCTGAAGAAG AATATCTTGA TGCGCTAGAA GAGCACGGTG ATGAGTTTGA AGCAAAAATG
GGTGCCGAAG CGGTTTTCGA ATTGCTTAAA GCCCTAGACG TTGATGCTGA TGTTGCTGCT
ATGCGCGAAG AATTGCCTAG CATTAACTCT GAGACTCGTC GTAAGAAAAT CACTAAGCGC
TTGAAGCTAC TTGAATCGTT CCAATTGTCT GGTAACAAGC CAGAGTGGAT GATCCTTACT
GTTCTTCCGG TATTACCACC TGACTTACGT CCTCTGGTAC CGCTAGATGG TGGTCGTTTT
GCAACATCTG ATTTGAACGA TCTGTATCGT CGAGTGATTA ACCGTAACAA CCGTTTGAAG
CGTCTTCTAG ACCTTGCTGC ACCTGACATT ATCGTGCGCA ACGAAAAACG TATGTTACAA
GAAGCAGTTG ATGCCTTGTT AGATAACGGC CGTCGTGGTC GTGCTATCAC AGGCTCAAAT
AAGCGTCCTC TTAAATCTTT GGCCGACATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAA
AACTTATTGG GTAAACGTGT AGATTACTCT GGTCGTTCAG TTATCACTGT TGGTCCTACT
CTACGTTTAC ATCAGTGTGG TCTTCCTAAG AAGATGGCAC TTGAGCTATT CAAACCGTTC
ATCTATGGAA AATTAGAAGG GCGTGGTTTA GCGACAACCA TTAAAGCAGC CAAAAAATTA
GTTGAACGTG AAGATCCGGA AGTATGGGAC GTTCTAGACG AAGTTATTCG TGAACACCCA
GTATTACTTA ACCGTGCGCC TACACTTCAC CGATTGGGTA TCCAGGCGTT TGAGCCAACC
CTAATTGAAG GTAAAGCGAT CCAATTGCAC CCATTAGTAT GTGCGGCGTA TAACGCTGAC
TTCGATGGTG ACCAAATGGC GGTTCACGTT CCGTTGACTA TCGAAGCACA GCTAGAAGCA
CGTGCGTTAA TGATGTCAAC CAACAACATT CTATCACCAG CCAATGGTGA GCCTATCATC
GTTCCTTCAC AGGATGTTGT AATGGGCTTG TACTATATGA CACGTGACCG TGTTAATGGT
TTAGGTGAAG GCATGATGTT CACTAGCCCA GACGAAGCTG AAAAAGCGTA TCGTACGGGT
AATGCGGAAC TTCACGCTCG CGTTAAGGTA CGTATCACTG AGTATGACGT AGCAGAAGAC
GGTTCTAAGA CAGAGAAAGT AACATTGACA GATACTACTG TTGGTCGTGC AATTTTGTCT
TTGGTATTAC CAAAAGGCTT GCCTTTTGAG TTAATCAACC AAGCCATGGG CAAGAAGATG
ATTTCTCGCC TACTGAACGC TTGTTACCGT ACTCTAGGTC TGAAAGATAC TGTTATCGCG
GCTGACCAAA TTATGTATAC CGGTTTCCAC TACGCAATGA TTGCGGGTGC GTCTGTTGGT
ATCGATGACA TGGTTATCCC TGATGCGAAG AAAGACATCA TTGAAGGTGC TGAAGCTGAA
GTACGTGAAA TCCAAGAGCA ATTCCAGTCT GGTCTTGTTA CTGCGGGTGA GCGTTACAAC
AAGGTTATCG ATATCTGGTC TAACGCTAAC GAAAAAGTAG CGAAAGCCAT GATGGAAAAT
CTATCAATCG AAACGGTTAA GAACCGTGAC GGTGAGATGG AAGACCAAGC ATCATTCAAC
TCAGTATTTA TGATGGCCGA CTCTGGTGCT CGTGGTAGTG CCGCACAGAT TCGTCAGTTG
GCGGGTATGC GTGGTCTGAT GGCGAAACCA GATGGTTCAA TCATCGAAAC GCCAATCACC
GCTAACTTCC GTGAAGGTCT AAACGTACTT CAGTACTTTA TATCTACTCA CGGTGCGCGT
AAAGGTTTGG CCGATACGGC ATTGAAAACA GCTAACTCAG GTTACTTGAC TCGTCGTTTG
GTTGATGTTG CACAAGATTT GGTTATCAAT AACGAAGATT GTGGCACATT CGAAGGTGTG
AAAATGACAC CGCTAATCGA AGGTGGTGAC GTTGTTGAGC CGCTTCGTGA ACGTGTACTA
GGTCGTACCG TTGCCGAAGA CGTGTTGAAG CCTGGTACTA ATGAAATTCT AGTAGAACGT
AACGTGCTAC TGGATGAAGC ATTGGTTGAT ATGCTTGAGT CTAACTCGGT TGATCAAATC
CAAGTTCGCT CGGTTATTAC CTGTGAAAAT GACTTTGGTG TATGTGCTAA GTGTTACGGT
CGTGACCTTG CACGTGGTCA CATGGTTGGT CACGGTGAAG CGGTTGGTGT TATTGCTGCA
CAATCAATCG GTGAGCCAGG TACACAGTTA ACCATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCACGAG CGTCAGCTGA GAACAGCGTA CAGGTCAAAA CAACAGGTAC ACTGAAGCTA
CAAAATGCTA AGTTCGTTCG CAACACAGAC GACAAAGTGG TTATCGTTTC TCGTTCAACT
GAAATCACTA TTATTGATGA TCAAGGTCGT GAGAAAGAGC GTTATAAAGT GCCTTACGGT
GCTATCTTAA CCACAGATGA CAATGCGACA GTCACTAGCG GTGAAGTCGT TGCTAACTGG
GACCCGCATT CGCATCCAAT CGTTACTGAG CGTCAAGCTA AGATCAGCTT TGCTGACATC
GATGACAGTA ACACCGAAAT GCAGCAGGAT GAGTTGACAG GTCTTACACG TATCGTCGTA
AATGATCTAT CTAAGGCGAA TGCTAAAGAG CCTAAGCTAA TCCTTGAAAG TGATGAGCAT
GGCTTACAAG AAATTCGTTT GCCGAGTTTC ACCACGATTG AAGCCACTGA CGGTATGCAG
GCTAAGCCTG GTGATGTGTT AGCGCGTATT CCTCAGGAAA GCTCGAAAAC ACGTGATATT
ACCGGTGGTC TTCCACGTGT TGCTGACTTG TTCGAAGCAC GTAAACCTAA AGAGCCAGCT
ATTTTAGCCG AAGTCTCAGG TACCATTGGT TGGGGTAAAG AAACCAAAGG TAAGAAACGT
CTTGTTATCA CGCCGAAAGA CGCTGATGCA TACGAAGAGA TGATCCCTAA ATGGCGTCAA
CTTAACGTGT TCGAAGGTGA AAACGTTGAG AAAGGTGAAG TTATTGCGGA TGGCCCAGAG
TCACCTCATG ACATCCTACG CTTACGTGGT ATCAGTGCTG TTTCTAACTA TATCGTTAAT
GAAGTACAAG AAGTTTACCG CCTCCAAGGG GTAAAAATTA ACGATAAGCA CATCGAAGTG
GTTATTCGTC AAATGCTACG TAAGTGTATG ATCACTTATG CAGGCGACAG TAACTTCCTT
GAAGGTGAGC AAGTAGAAGT ATCTAACGTG AAAATCGCTA ACCGTGAATT GGAAAAGCAA
GGCAAAATCC CTGCTCAGTA CGAAACACAG TTATTGGGTA TCACAAAAGC ATCGTTGTCC
ACTGAGTCAT TTATCTCAGC GGCATCTTTC CAAGAAACCA CTCGTGTACT TACCGAAGCC
GCTGTGCAAG GTAAAGAAGA TGAGTTACGT GGCTTGAAAG AGAACGTTAT TGTAGGTCGT
TTGATACCAG CCGGTACCGG TTTTGCGTAT CACCAGAAAC GTACTGCAAG AAAACTAGCA
GAGCGTCAGG CAGTTGAAGA ACTATCTGTC TCTGCAGCAG ATGCGGAGCA AGCCTTAACT
GAAGCACTTA ATGCTGAAGT CATGGACACG CCATCATCTG ATGAGTAA
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| Protein sequence | MKDLLKFLKQ QHKSEEFDNI RIGLASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTLTKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESYVVAEPG MTTLERSQLL SEEEYLDALE EHGDEFEAKM
GAEAVFELLK ALDVDADVAA MREELPSINS ETRRKKITKR LKLLESFQLS GNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKL VEREDPEVWD VLDEVIREHP
VLLNRAPTLH RLGIQAFEPT LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTIEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVMGL YYMTRDRVNG LGEGMMFTSP DEAEKAYRTG
NAELHARVKV RITEYDVAED GSKTEKVTLT DTTVGRAILS LVLPKGLPFE LINQAMGKKM
ISRLLNACYR TLGLKDTVIA ADQIMYTGFH YAMIAGASVG IDDMVIPDAK KDIIEGAEAE
VREIQEQFQS GLVTAGERYN KVIDIWSNAN EKVAKAMMEN LSIETVKNRD GEMEDQASFN
SVFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVIN NEDCGTFEGV KMTPLIEGGD VVEPLRERVL
GRTVAEDVLK PGTNEILVER NVLLDEALVD MLESNSVDQI QVRSVITCEN DFGVCAKCYG
RDLARGHMVG HGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRASAENSV QVKTTGTLKL
QNAKFVRNTD DKVVIVSRST EITIIDDQGR EKERYKVPYG AILTTDDNAT VTSGEVVANW
DPHSHPIVTE RQAKISFADI DDSNTEMQQD ELTGLTRIVV NDLSKANAKE PKLILESDEH
GLQEIRLPSF TTIEATDGMQ AKPGDVLARI PQESSKTRDI TGGLPRVADL FEARKPKEPA
ILAEVSGTIG WGKETKGKKR LVITPKDADA YEEMIPKWRQ LNVFEGENVE KGEVIADGPE
SPHDILRLRG ISAVSNYIVN EVQEVYRLQG VKINDKHIEV VIRQMLRKCM ITYAGDSNFL
EGEQVEVSNV KIANRELEKQ GKIPAQYETQ LLGITKASLS TESFISAASF QETTRVLTEA
AVQGKEDELR GLKENVIVGR LIPAGTGFAY HQKRTARKLA ERQAVEELSV SAADAEQALT
EALNAEVMDT PSSDE
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