| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0598 |
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| Symbol | rpoB |
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| ID | 4174086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 682317 |
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| End bp | 686345 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053601 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_660181 |
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| Protein GI | 109896926 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.487208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CTTATAGCGA AAAGAAACGT ATCCGTAAGG ATTTTGGCAA ACGCCCACAG
GTATTGGAAA TACCGTATCT ACTTTCAATC CAGCTAGATT CTTTTAAAAA GTTTATTGAC
CTTGACGTCG ATGGTCAGCA TGGACTGGAA GCAGCATTTC GATCAGTTTT CCCAATAAAA
AGTTACTCTG GTAACGCAGA ATTACAGTAC GTAAGTTACC GTTTAGGTGA GCCCGTATTT
GACGTAAAAG AATGTCAAAT CCGTGGTGTA ACCTTTTCAG CGCCTTTGCG TGTTAAATTA
CGTTTAGTGT TGTTCGATCG TGAAGCAGCA CCAGGCACAG TAAAAGACAT CAAAGAGCAA
GAAGTTTACA TGGGCGAAAT TCCGCTCATG ACTGAAAATG GAACTTTCGT CATTAACGGT
ACTGAGCGAG TCATTGTATC TCAGTTACAC CGTTCGCCAG GCGTATTCTT TGATCACGAT
AAAGGTAAAA CTCACTCATC AGGTAAAGTG TTATATAACG CGCGCGTTAT ACCTTACCGT
GGTTCGTGGT TAGACTTTGA ATTTGACCCT AAAGATAACC TTTATGTTCG TATCGATAGA
CGCCGCAAAT TGCCTGCGAC TATCATGCTA CGTGCATTAG AAATTCCTAC CGAAGAAATT
CTTGGTATGT TCTTTGAGAA GAACCAAGTA CGTATCGACG GTAATCGTTT CATGTCTGAT
ATCGTGCCAG ATCGCCTTCG TGGTGAAACT GCACAATTCG ATATTTTAGA CTCGGATGGC
AATGTGCTTG TAGAAGCAGG CCGTCGTATT TCAGCTCGTC ATACCCGTGC GCTTGAAAAA
GCCGGTATCG TTGAACTTGA GGTACCAGCT GAATACTTAG TTGGCCGTGT ATTCGCGTGT
GATTACGTGG ATCAAGAAAC CGGTGAACTT GTTGTTGCTG CAAACGATCT ATTAACACTT
GAAAATGTTC TGGCACTTAA AGAAGCCGGA TATACAACGT TTGAAACTTT GTATATTAAC
GAACTTGATC ACGGTGCTTA TATCTCTGAC ACCTTGCGCA TTGATAGCTC AACTAACCGC
CTAGAAGCGT TGGTTGAAAT TTATCGCATG ATGCGCCCTG GTGAGCCACC AACGAAAGAC
GCAGCAGAAA CGTTATTTAC TAACCTGTTC TTCTCCGAGG ATCGTTACGA TTTATCGTCT
GTTGGACGTA TGAAGTTCAA CCGTCGTTTA GGTCGTGAAA CATCTATCGG TGCAGGCACA
TTAGACAAAG ACGACATCGT TGACGTAATG AAGCAACTGA TCACTATTCG TGACGGTAAA
GACGACGTTG ATGATATCGA TCACTTGGGT AACCGTCGTA TTCGTTCTGT TGGCGAAATG
GCCGAGAACC AATTCCGTGT TGGTCTAGTT CGTGTTGAAC GTGCCGTTAA GGAACGTTTG
AGCTTAGGTG ATTTAGACGC TGTTATGCCT CAAGACCTTA TTAATGCGAA GCCTATTTCG
GCTGCGGTTA AAGAGTTCTT TGGCTCAAGC CAGTTGTCTC AGTTTATGGA TCAGAACAAC
CCGTTGTCTG AAGTAACCGA TAAGCGTCGT ATTTCAGCCT TAGGCCCGGG CGGTCTTACA
CGTGAGCGTG CAGGCTTCGA AGTACGAGAT GTACACCCGA CTCACTATGG TCGTGTATGT
CCTATCGAAA CACCTGAGGG ACCAAACATC GGTTTGATCA ACTCGCTGGC GAGTTTCGCT
CGTACCAATG ATTTTGGTTT CCTAGAAACA CCATATCGTA AGATTGTTGA CGGTGTAGTG
ACTGACGAAA TCGATTACTT ATCAGCAATC GAAGAAGGTC AATTCTCAAT CGCACAGGCT
AACGTTGTGC TTGATGAAAC TGGCCGTCTT GCTGATGACT TGATCCCTTG TCGTCACCGC
GGTGAAACAA CATTGAAAGA AAGCTCTGAG ATCACCTACA TGGATGTATC TCCGCAGCAA
ATCGTTTCAA TCGCAGCCAG TATCATCCCG TTCCTAGAAC ACGATGATGC TAACCGAGCC
TTGATGGGTG CGAACATGCA ACGTCAAGCG GTGCCAACGC TTATTGCAGA TAAGCCACTT
GTTGGTACCG GTATGGAAAA AACAGTTGCA GTTGATTCTG GTGTAACAGT AGTAGCTAAA
CGCGGTGGTC GTGTCGACTA CGTTGATGCA AGCCGTATTG TTATTAAAGT TAATGAAGAA
GAAACGGTTG CCGGCGAAGC GGGCATCGAT ATCTACAACT TAACTAAGTA CACCCGTTCT
AACCAGAACA CCTGTATCAA TCAGCGTCCT ACTTGTAATG TTGGTGAGCC AATTGTTGCG
GGTGACGTAT TAGCCGATGG TCCATCTACT GATTTAGGTG AATTAGCGCT AGGGCAAAAC
ATGCGTATCG CATTCATGCC TTGGAACGGT TATAACTTCG AAGATTCAAT CTTGATCTCT
GAGCGCGTTG CTATGGAAGA TCGTTTCACC ACAATTCATA TTCAAGAATT GAGCTGTGTG
GCACGGGATA CCAAGTTAGG GCCAGAGGAA ATCAGTTCTG ATATTCCAAA TGTAGGTGAA
TCTGCGCTGG GTAAATTGGA CGAGTCCGGT GTTGTGTACA TCGGTGCTGA AGTTAAAGGT
GGCGACATCT TAGTGGGTAA AGTTACCCCT AAAGGTGAAA CACAGTTAAC ACCTGAAGAG
AAACTTTTAC GAGCTATCTT CGGTGAGAAA GCATCTGACG TTAAAGATAC TTCATTGCGC
GTGCCTAACA GCGTTCGTGG TACTGTCATT GATGTACAGG TATTTACTCG TGATGGCGTA
GAAAAAGATA AGCGTGCACT TGAAATTGAA GGCATGCAGT TACGTCAAGT GAAGAAAGAT
TTATCAGACG AATTCAATAT TCTTGCTGAT GGCATCTTCG CTCGTGCTAA AAACTTGTTG
ATTAAATCCG GTATCGAAGA GTCTCGTTTA GAGTCTGCTC AACGTGAAAA ATGGTTCGAC
CTAACGCTAA CAGATGAAGA TGCGCAAACT GAGCTTGATC AAATTGCTGA GCAGTTTGTT
GAAATCAAAG CTGATTTTGA TAAGAAGTTC GAAATCAAGC GACGCAAGAT CACTCAAGGT
GATGATCTTC AACCAGGCGT TCTTAAAATC GTTAAGGTTT ACTTGGCTGT TAAACGTCAA
ATTCAACCTG GTGATAAGAT GGCTGGTCGT CACGGTAACA AGGGTGTTAT TTCAACAATT
AAACCAGTTG AAGACATGCC TTACGATGTT AACGGTACGC CGGTAGACAT CGTATTGAAC
CCATTGGGTG TACCGTCACG TATGAACATC GGTCAGATCC TTGAGACTCA CTTAGGTATG
GCTGCTCATG GCATAGGCGT GAAAATCGAC CGCATGTTAA AAGAGCACGA AGAGATGGCC
AAGTTACGTA GCTTCCTTAA AGAGGTTTAC GGTGCTGGCA CAACTCACCA AGAAGTGGAT
CTTGATAACT TCAGTGATGA CGAAATTACC CGTCTAGCAG ATAACTTGCG TAAAGGTGTG
CCTATGGCAA CACCAGTGTT TGATGGTGCT ACTGAGGCAG AAATCAAGCA TATGCTTACG
CTTGCTGATC TTCCTGAAAG TGGACAAATC GCTTTGTTTG ACGGTCGTAC CGGACGTGAA
TTTGAACGTC CAGTAACAGT TGGCTACATG TACATGTTGA AACTTAACCA CTTGGTTGAT
GACAAAATGC ATGCTCGTTC AACTGGCTCA TACAGCTTGG TTACACAGCA GCCGTTGGGT
GGTAAAGCTC AATTCGGTGG TCAGCGCTTC GGAGAGATGG AAGTATGGGC ACTGGAAGCA
TACGGTGCCG CTTACACCTT GCAAGAAATG TTGACAGTTA AATCTGATGA TGTGAATGGT
CGTACTAAGA TGTATAAAAA CATCGTTGAT GGTGATCATC GCATGGAACC TGGTATGCCA
GAATCTTTCA ACGTATTGTT GAAAGAGATT CGCTCACTAG GTATCAACAT CGAGCTGGAA
GAGCAATAA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLEIPYLLSI QLDSFKKFID LDVDGQHGLE AAFRSVFPIK
SYSGNAELQY VSYRLGEPVF DVKECQIRGV TFSAPLRVKL RLVLFDREAA PGTVKDIKEQ
EVYMGEIPLM TENGTFVING TERVIVSQLH RSPGVFFDHD KGKTHSSGKV LYNARVIPYR
GSWLDFEFDP KDNLYVRIDR RRKLPATIML RALEIPTEEI LGMFFEKNQV RIDGNRFMSD
IVPDRLRGET AQFDILDSDG NVLVEAGRRI SARHTRALEK AGIVELEVPA EYLVGRVFAC
DYVDQETGEL VVAANDLLTL ENVLALKEAG YTTFETLYIN ELDHGAYISD TLRIDSSTNR
LEALVEIYRM MRPGEPPTKD AAETLFTNLF FSEDRYDLSS VGRMKFNRRL GRETSIGAGT
LDKDDIVDVM KQLITIRDGK DDVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVKERL
SLGDLDAVMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTDKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRVC PIETPEGPNI GLINSLASFA RTNDFGFLET PYRKIVDGVV
TDEIDYLSAI EEGQFSIAQA NVVLDETGRL ADDLIPCRHR GETTLKESSE ITYMDVSPQQ
IVSIAASIIP FLEHDDANRA LMGANMQRQA VPTLIADKPL VGTGMEKTVA VDSGVTVVAK
RGGRVDYVDA SRIVIKVNEE ETVAGEAGID IYNLTKYTRS NQNTCINQRP TCNVGEPIVA
GDVLADGPST DLGELALGQN MRIAFMPWNG YNFEDSILIS ERVAMEDRFT TIHIQELSCV
ARDTKLGPEE ISSDIPNVGE SALGKLDESG VVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDTSLR VPNSVRGTVI DVQVFTRDGV EKDKRALEIE GMQLRQVKKD
LSDEFNILAD GIFARAKNLL IKSGIEESRL ESAQREKWFD LTLTDEDAQT ELDQIAEQFV
EIKADFDKKF EIKRRKITQG DDLQPGVLKI VKVYLAVKRQ IQPGDKMAGR HGNKGVISTI
KPVEDMPYDV NGTPVDIVLN PLGVPSRMNI GQILETHLGM AAHGIGVKID RMLKEHEEMA
KLRSFLKEVY GAGTTHQEVD LDNFSDDEIT RLADNLRKGV PMATPVFDGA TEAEIKHMLT
LADLPESGQI ALFDGRTGRE FERPVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GDHRMEPGMP
ESFNVLLKEI RSLGINIELE EQ
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