| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0595 |
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| Symbol | rplA |
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| ID | 4173252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 680028 |
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| End bp | 680729 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053598 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_660178 |
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| Protein GI | 109896923 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00100936 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTAAAT TAACTAAACG CGCTCGTCTT GTACGTGACA AAGTAGAAGC GACGAAAGAA
TACGATTTCA ATGAAGCGGT TGCTTTGTTG AAAGAACTTG CTACCGCAAA ATTCGCTGAA
AGTGTTGATG TTGCTGTAAA TCTTGGCATT GATGCACGTA AATCTGATCA AAACGTTCGT
GGCGCAACTG TGCTTCCTAA CGGTACTGGT AAAGAAGTAC GTGTTGCTGT TTTCACTCAA
GGTGCAAACG CTGAAGCTGC TAAAGAAGCT GGTGCTGACA TCGTTGGTAT GGAAGACCTA
GCTGAGCAAG TTAAGAAAGG CGAAATGAAC TTTGACGTAG TTGTTGCATC TCCTGACGCA
ATGCGCGTTG TAGGTATGTT AGGCCAAATC TTAGGCCCAC GTGGTTTAAT GCCTAACCCT
AAAACGGGTA CAGTAACGCC AGACGTAGCG ACAGCGGTTA AGAACGCTAA AGCTGGTCAG
GTTCGTTACC GCAATGACAA GAATGGTATC ATTCATGCCA GCATCGGTAA GATTGCTTTT
GAAAGCAACC AAATCGAAGA AAACTTAGCT GCTTTGATTG AAGCTGTTAA GAAAGCCAAG
CCTTCATCGG CTAAAGGCGT ATACATTAAG AAAATCAGCT TAAGCACTAC TATGGGCGCG
GGTATTACCA TCGACCAAGC TAGTTTAACA GCAGCAAGCT AA
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| Protein sequence | MAKLTKRARL VRDKVEATKE YDFNEAVALL KELATAKFAE SVDVAVNLGI DARKSDQNVR
GATVLPNGTG KEVRVAVFTQ GANAEAAKEA GADIVGMEDL AEQVKKGEMN FDVVVASPDA
MRVVGMLGQI LGPRGLMPNP KTGTVTPDVA TAVKNAKAGQ VRYRNDKNGI IHASIGKIAF
ESNQIEENLA ALIEAVKKAK PSSAKGVYIK KISLSTTMGA GITIDQASLT AAS
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