| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0591 |
|---|
| Symbol | |
|---|
| ID | 4173247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 675868 |
|---|
| End bp | 677709 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638053593 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_660174 |
|---|
| Protein GI | 109896919 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0415751 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCAT TTTTTGAACG GTTAGTAGAG CCGTTCCCAC AGGATATGCC TGGGCAACCT
CCAGAAGGCT TGGTGGCGTT TTGTCGTTAT TACTCCAAAG GAATGTGGCC CGCTATTTTT
GCAGTATCGA TACTTGCAGC AGCTATCGCC ATGTTAGAAG TGTCGTTATT TGGATTTGTT
GGGCAGTTAG TCGATTGGCT GGCGTCTAAA GATCCTGACA CCTTTTTAGC CGAAGAAAAA
AGTAGCTTGA TATGGATGGG AGCCGTGGTA CTGGTGATTT TGCCTAGCTG CGTAGCACTG
CAATCATTGA TTAACCATCA AACACTCATG GGTAATTATC CCATGCGCAT TCGTTGGCAA
GCGCACCGGT ATTTGATTGG CCAAAGTATC AGCTTTTTCC AGAATGAATT TGCCGGCCGC
ATCGCCACCA AAGTCATGCA AACCGCACTG TCGGTTCGTC AGTCGGTCAT GCAGCTACTT
AATTTATTGG TATACATCAG TGTCTATTTT CTCAGTATCG TGGTCATGGT TTTTAGCATT
GATTGGCGAT TGAGTTTGCC TTTAATCTTG TGGCTGTGCA TATACATAGG TGTTCTACGC
TACTTTGTGC CGCGATTGAA ACGAGTTGCT CAGCGCCAAG CTGATGCACG TAGTGTGATG
ACCGGCAGAA TAGTCGATAG TTACAGCAAT ATTGCTACGG TTAAGCTTTT CTCGCACACC
AGCCGTGAAG CCGATTATGC CTATGAAGGT ATGAATGGGT TCTTGCAAAC GGTTCATCCG
CAAATGCGTT TGGTTACCTT GCTTAATACC TGTGTGTGGT TCAGTAATGC ACTGTTAGTA
TTCTCTATCA GTGCTTTATC CATCTACCTT TGGTTAGAAA AAGTGGTGAC GCCGGGGGAT
ATCGCTATTG CTATTACGTT GTGCCTTCGT TTAAACGGCA TGTCTCAGTG GATCATGTGG
GAAGTATCAT CCCTTTTTGA AAATATAGGT ACAGTACAAG ACGGGATCAA TACCTTGTCT
AAACCGACGG CGGTTAAAGA CATTGACAAT GCGCCGCCTC TTAACGTCAG TGGTGGGGCG
ATTACCTTTT CTGATGTGAC ATTTAATTAC CCTGGACCTG AAAATAAGCA GATAGAGGTG
TTTAACAACC TTAATATCGA TATAAAACCG GGTGAAAAGG TTGGGTTAGT TGGTCGTTCG
GGGGCGGGTA AATCGACACT GGTTAACTTG TTACTGCGCT TCTTTGATGT GCAAAGCGGC
AAGATATTAG TCGATGGGCA AGACGTGAGC GAAATTAGTC AGGAAAGCTT ACGTTCTCAT
ATCAGTATGG TTACCCAAGA TACATCGCTG TTACATCGTT CTGTGCGCGA CAATATTTTA
TATGGTCGAT TAGGTGCCAG TGAAGAAGAA ATGCTGGCTG CTGCGAAACA GGCCGAGTCC
CATGAATTTA TTCAAAACCT TTCCGATTTA CATGGGCATA CAGGGTATGA CGCACAAGTC
GGCGAGCGTG GTGTTAAGTT ATCTGGGGGC CAGCGCCAAC GTATCGCCAT TGCGCGGGTC
ATGCTTAAAG ATGCACCTAT TCTTATTCTG GATGAGGCTA CATCAGCTTT AGATTCGGAA
GTAGAAGCCG CTATACAAGA ATGCCTCAAC AAGGTAATGG AAAATAAAAC GGTTTTAGCC
ATTGCCCACA GGTTGTCCAC TATCGCCCAA ATGGATCGGT TATTAGTGCT GGACGATGGT
CGTATAGTTG AGTCGGGTAC ACATAATGAG CTGTTGGCGC ACAATGGTAT TTACGCCAAG
TTATGGGCCC ATCAAACCGG TGGTTTTATC GGTGTTGAGT AA
|
|---|
| Protein sequence | MFSFFERLVE PFPQDMPGQP PEGLVAFCRY YSKGMWPAIF AVSILAAAIA MLEVSLFGFV
GQLVDWLASK DPDTFLAEEK SSLIWMGAVV LVILPSCVAL QSLINHQTLM GNYPMRIRWQ
AHRYLIGQSI SFFQNEFAGR IATKVMQTAL SVRQSVMQLL NLLVYISVYF LSIVVMVFSI
DWRLSLPLIL WLCIYIGVLR YFVPRLKRVA QRQADARSVM TGRIVDSYSN IATVKLFSHT
SREADYAYEG MNGFLQTVHP QMRLVTLLNT CVWFSNALLV FSISALSIYL WLEKVVTPGD
IAIAITLCLR LNGMSQWIMW EVSSLFENIG TVQDGINTLS KPTAVKDIDN APPLNVSGGA
ITFSDVTFNY PGPENKQIEV FNNLNIDIKP GEKVGLVGRS GAGKSTLVNL LLRFFDVQSG
KILVDGQDVS EISQESLRSH ISMVTQDTSL LHRSVRDNIL YGRLGASEEE MLAAAKQAES
HEFIQNLSDL HGHTGYDAQV GERGVKLSGG QRQRIAIARV MLKDAPILIL DEATSALDSE
VEAAIQECLN KVMENKTVLA IAHRLSTIAQ MDRLLVLDDG RIVESGTHNE LLAHNGIYAK
LWAHQTGGFI GVE
|
|---|
| |