Gene Patl_0580 details

Gene Information

• Locus tag: Patl_0580
• ID: 4174027
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 665706
• End bp: 666269
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638053582
• Product: Lipocalin-like
• Protein accession: YP_660163
• Protein GI: 109896908
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3040] Bacterial lipocalin

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAATTAA AATCGTCATT ACTCACTTTC TTCAGGGGGT TGCCAAAGTC TGGGTACAGG 
CTAGCGATTC TCTTGTTTGT CGTGCTTTTA AATGCTTGTA CTTCTTTACC TGAAGGTATT 
AAACCGGTGA AAGATTTTGA GTTGCAACGT TATCTGGGCA AGTGGTACGA AATCGCACGC 
CATGATCACT CATTTGAACG AGGCTTGGAA CAAGTAACAG CACAATACAG TATGCGAGAT 
GATGGCGGTG TGAAAGTCAT TAATCGTGGT TTCAACCCAG AAGAGCAGGA GTGGGACGAA 
GCCATTGGCA AAGCTTATTT TGTTGGCGAG CAAAACACCG GTCATTTGAA GGTGTCTTTT 
TTTGGACCTT TTTATGCAAG TTATGTGATC TTTTCGTTAG ACATTGATGA CTACGGTTAT 
GCGATGATCA CTGGACCTAA CAGAGATTAC TTTTGGATCT TGGCCCGTCA ACCTGAGCTT 
GAGGATGATG TGCTGCAACG CTTGCTGACT AAGGCACGCG ATGCAGGCTT TGATACTGAA 
AAGTTAATTT TCGTCAACCA GTGA 

 

Protein sequence

MQLKSSLLTF FRGLPKSGYR LAILLFVVLL NACTSLPEGI KPVKDFELQR YLGKWYEIAR 
HDHSFERGLE QVTAQYSMRD DGGVKVINRG FNPEEQEWDE AIGKAYFVGE QNTGHLKVSF 
FGPFYASYVI FSLDIDDYGY AMITGPNRDY FWILARQPEL EDDVLQRLLT KARDAGFDTE 
KLIFVNQ