Gene Patl_0568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0568 
Symbol 
ID4174015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp655778 
End bp657271 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content45% 
IMG OID638053570 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_660151 
Protein GI109896896 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.380077 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCCT CTTTACAATT AAAATTTAGT CAATCACTCA CTATGACGCC ACAGTTACAG 
CAAGCTATTC GTTTGTTGCA ATTGTCTACG TTAGATTTAC AGCAAGAAAT TCAAGAAGCC
TTGGATTCCA ACCCGCTGTT GGAAGTTGAA GAGCCTACGG ATCAGGAATC CGGCGATAGT
GCGTTAAATG ACAATTCCCT CGACCCGTCT TCTAAAGATA CCAATGAAAT AGTTGATACC
AGCAGTGACA ACTTAGACTC AAGTGAAGCG TTCGAGAAAA ACGAAATCCC AGAAGACTTA
CCTACGGATA CCACTTGGGA TGAGTACATC AGCGCTTCTT CCGCACCTGC CTCTAGCATA
TCCAGTGGTG CCGGCGGTGA TGACGAACAG ATCTTTCAAG GCGAAACCAC AGATAACATT
CAAGATCATT TGCTGTGGCA AATGCGTTTA ACCCATTTTA GTGATACCGA TGTCGCGATT
GCGACAGCGA TCATTGATTC TATCGATGAG TCTGGTTATT TGACCATGAG CGCTGAAGAC
GTTCTGGCCA GCATGGATGA TGAAGAAATA GAGCTCGATG AAGTGGAATG CGTACTTAAG
CGTATTCAAA TGTTCGACCC AATTGGGTCA GGCTCTCGTA CACCACAAGA ATGCTTGCTA
GTGCAATTGC GTCAGTTTGC TCCTGATACA CCCTGGTTAG AAGAAGCGAA GACCTTGATT
GGGGACTATG CCGACCTTTT GGCAAGCAAG GATTACCGTA CTTTGATGCG TAAATCTCGC
CTTAAAGAGG ATGATTTGCG TGAGGTCATG CGTTTACTTA AAACGCTCAA TCCGCGTCCA
GGCAGCGCCT TGATCAAAGG TGAAGCAGAA TACGTTATAC CTGATGTGTC AGTGAGTAAG
AAAAATGGCC GTTGGACAGT AGAGCTTAAC CCAGACAGCC TACCCAAATT GAACGTTAAT
CAACAGTATG CTGCAATGAG TCGTAGCGCG AAAAACACCA GTGATAGTCA ATTTATTCGC
TCACACATGC AAGAAGCCAA ATGGTTTATT AAAAGTGTTG AGAGCCGAAA CGATACCTTA
TTGAAAGTGT CAAACTGTAT AGTACAGCAG CAAATGGGCT TCTTTGAACA TGGGCCTGAG
ATGATGAAGC CTATGGTACT AAATGACGTA GCCGAAATGG TGGATATGCA TGAATCTACA
ATTTCTCGTG TTACTACCCA AAAATATATG CATACCCCTA GAGGTATATT TGAGCTGAAA
TATTTCTTCT CGAGCCATGT TGCAACTGAG ACAGGCGGAG AGTGCTCGTC AACGGCGATA
CGCGCATTGA TTAAAAAGCT GGTCGCAGCT GAAAAACCAA GCAAGCCGTT AAGTGACAGC
AAGATTGCTC AATTGTTGGC CGATCAAGGC ATCATGGTCG CTCGGCGAAC AATAGCAAAG
TACCGGGAAT CTCTGATGAT ACCCCCGTCG AACCAACGAA AAAGCCTATT GTAG
 
Protein sequence
MKPSLQLKFS QSLTMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPLLEVE EPTDQESGDS 
ALNDNSLDPS SKDTNEIVDT SSDNLDSSEA FEKNEIPEDL PTDTTWDEYI SASSAPASSI
SSGAGGDDEQ IFQGETTDNI QDHLLWQMRL THFSDTDVAI ATAIIDSIDE SGYLTMSAED
VLASMDDEEI ELDEVECVLK RIQMFDPIGS GSRTPQECLL VQLRQFAPDT PWLEEAKTLI
GDYADLLASK DYRTLMRKSR LKEDDLREVM RLLKTLNPRP GSALIKGEAE YVIPDVSVSK
KNGRWTVELN PDSLPKLNVN QQYAAMSRSA KNTSDSQFIR SHMQEAKWFI KSVESRNDTL
LKVSNCIVQQ QMGFFEHGPE MMKPMVLNDV AEMVDMHEST ISRVTTQKYM HTPRGIFELK
YFFSSHVATE TGGECSSTAI RALIKKLVAA EKPSKPLSDS KIAQLLADQG IMVARRTIAK
YRESLMIPPS NQRKSLL