| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0563 |
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| Symbol | |
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| ID | 4174010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 652283 |
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| End bp | 653254 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053565 |
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| Product | KpsF/GutQ family protein |
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| Protein accession | YP_660146 |
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| Protein GI | 109896891 |
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| COG category | [K] Transcription
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation
[COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains |
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| TIGRFAM ID | [TIGR00393] KpsF/GutQ family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.57393 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCAGC AAGAGTATAT TCAGTCAGCC CTGCGGGTGC TTGAAATTGA AGGTCAGGCA
ATCAAGCAGT TATCCCAATA TATTGACGAC AATTTTATTG CAGCATGCGA GCTCATGAAA
AACTGCAAAG GCAAAGTGGT TGTTTGCGGT ATGGGTAAAT CTGGCCACAT AGGGCATAAG
ATATCTGCGA CATTAGCGAG TACGGGAACG CCTGCATTTT TTATGCACCC AGGGGAGGCA
AATCACGGTG ACCTAGGCAT GCTTACAGAG CAAGATGTTC TGCTGGCGAT TTCTAATTCA
GGTGAAACAT CTGAGCTATT GGCACTATTG CCTGTGGTGA AACGTCGTGG TATTGCCATT
ATTGCCATGT CGAATAACCC TGCTAGTTCG TTAGGTAAGC ACGCCGACGT CAATTTGTGT
ATTAAAGTTG AAAAAGAAGC TTGTTCTCTA GGCTTGGCGC CCACGGCGAG CACCACGGCA
ACTTTAGTCA TGGGAGATGC TCTGGCGGTG GCACTGTTAG ATGCAAGAGG TTTCACGCCG
GATGACTTTG CACTTTCTCA TCCTGGAGGT GCGCTTGGGC GCAAGCTTTT ACTTAAGCTT
GATGACATCA TGTGCCAAGG GGATCTGATG CCTTTGGTTG GCACGACCCA AACGATTAGC
CAGGCACTAC TTGAAATTTC GCGCAAAGGG CTAGGAATGG CGGGTATCGT TGGCGATGAC
GGGCGTTTGC TGGGTATTTT TACTGACGGT GATTTACGAC GGGTACTGGA TGCCAGAGTC
GACATTCACA CAGTCAGTAT TGAAAGTGTT ATGACTGCTA ATTGTGTTAC AGCATCTCAA
GAAACCTTGG CTGCTGAGGT GTTAAACGTC ATGCAGAAAC GCAAAATCAG TTCACTGTTT
ATTGTTGATG ACAATCACCT TCCGGTCGGT GCCATCAACA TGCAAACCTT GTTATCAGCA
GGAGTGATAT AA
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| Protein sequence | MSQQEYIQSA LRVLEIEGQA IKQLSQYIDD NFIAACELMK NCKGKVVVCG MGKSGHIGHK
ISATLASTGT PAFFMHPGEA NHGDLGMLTE QDVLLAISNS GETSELLALL PVVKRRGIAI
IAMSNNPASS LGKHADVNLC IKVEKEACSL GLAPTASTTA TLVMGDALAV ALLDARGFTP
DDFALSHPGG ALGRKLLLKL DDIMCQGDLM PLVGTTQTIS QALLEISRKG LGMAGIVGDD
GRLLGIFTDG DLRRVLDARV DIHTVSIESV MTANCVTASQ ETLAAEVLNV MQKRKISSLF
IVDDNHLPVG AINMQTLLSA GVI
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