| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0554 |
|---|
| Symbol | |
|---|
| ID | 4172241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 645212 |
|---|
| End bp | 646198 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638053556 |
|---|
| Product | PDZ/DHR/GLGF |
|---|
| Protein accession | YP_660137 |
|---|
| Protein GI | 109896882 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00992555 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGATC TGCGTCACGG TAGTAGTTTG AACTTGTCGA TGTTCAACCC CACACGCCAG
ACATCAGACA AGCTTAGTTT TAATCATGCT GTTAATGTTT CTGGCCCCGC GGTAGTTAAT
ATTTATAGTC AATCCATTGA AAGTGGCAGT ATTTATAATC GCAGTCAGGC TGTTGAGCGC
ACAAGCTTAG GTTCAGGCGT TATCATGAGC GAAGACGGGT TGATATTGAC GTGTCTGCAC
GTAATCGCTA ATGCCAATAG TATCTTAGTG GGTTTGCAAG ATGGTCGTCG CGCAGAAGCG
CAAATCATCG GATATGACCC TTATACTGAT TTAGCCGTGC TAAAAGTTGC CGAGGATAAT
CTGCATGTTA TTCCCCAATT AGATGATCCT GGTACCCGAG TAGGTGATTT AGTGCTGGCG
ATTGGAAACC CTTATAATTT AGGACAAACC ATCACTCAGG GAGTAGTGAG CCGAGTCGGG
CGTAATGGTT TAGCTGCTTA TTTTGATTTT ATTCAGATGG ATGCAGTGCT CAATGAAGGT
AATTCAGGTG GCGCGTTAAT TGATAGCAAT GGCTATTTGA TTGGCATTAA CAATGCTAAT
TTTAAAACAC TGGATAGTCA GCGCCGAGTA AAGGAAGTTG ACGGTGTTTC GTTTGCCATT
CCTTATGGAT TAGCCAAAAA AGTCATGGAC GAAATAGTAG CAAATGGCCG TGTCACCCGA
GGTCAGCTCG GTGTTGGTGC TGCAGAGGTG TATGGCCGAT CTGGTATCCT CATCACCAGT
GTCTCTCCTG GTAGTTCTGC CGATAAAGGC GGTATTCGCA CCGATGATGT GATGCTCGCT
ATCAATGGTC AGCCAACGGA CAGCGTTACT CAAACATTAG ACTTTATTGC TGAAACAAAA
CCAGGGACTG AACTGCAAGT CGAGGTGAGT CGTGGTGGGC AATTAATCAC GTTAACGGTA
GTCGTTGCTG AACTGGGTGC CCAATAG
|
|---|
| Protein sequence | MPDLRHGSSL NLSMFNPTRQ TSDKLSFNHA VNVSGPAVVN IYSQSIESGS IYNRSQAVER
TSLGSGVIMS EDGLILTCLH VIANANSILV GLQDGRRAEA QIIGYDPYTD LAVLKVAEDN
LHVIPQLDDP GTRVGDLVLA IGNPYNLGQT ITQGVVSRVG RNGLAAYFDF IQMDAVLNEG
NSGGALIDSN GYLIGINNAN FKTLDSQRRV KEVDGVSFAI PYGLAKKVMD EIVANGRVTR
GQLGVGAAEV YGRSGILITS VSPGSSADKG GIRTDDVMLA INGQPTDSVT QTLDFIAETK
PGTELQVEVS RGGQLITLTV VVAELGAQ
|
|---|
| |