| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0551 |
|---|
| Symbol | |
|---|
| ID | 4172238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 641780 |
|---|
| End bp | 642886 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638053553 |
|---|
| Product | AFG1-like ATPase |
|---|
| Protein accession | YP_660134 |
|---|
| Protein GI | 109896879 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1485] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000457757 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCTT CAACCCCTTG GCAAAAATAT CAATCAGATT TACAGCGCGA CGACTTTCAT
TCTGACCCAG CCCAAGCCAA CGCAGTCAAA CAGTTGCAAC GCCTTTACGA TGACCTTGTA
GCGCCAGACA AAGAACCTAG CCTGTGGACC AAAGTGAAAT TTGTACTAGG TAAAGATGAT
AAAGCCCAGT CCATAAAAGG CTTATATTTT TGGGGGGGGG TAGGTCGAGG TAAAACCTAC
TTAGTAGATA CGTTTTACGA CTGCTTGCCA TTTGAGAAGA AGATGCGGGT GCATTTTCAC
CGGTTTATGC ACCGCGTTCA CGAGGAGTTG AAATCTCTCG GCGGTCAATC TGATCCACTT
AAAATAATTG CCGCGAAGTT TGCAAGCGAA GCCAAAGTCA TCTGCTTTGA CGAGTTTTTT
GTGTCTGATA TTACAGATGC CATGATCCTC GGTACGCTGA TGGAAGAGAT GTTCGCACGG
GGAATAGTCT TAGTAGCAAC GTCTAATATC ATCCCTGACG AGCTTTATCG AAACGGATTA
CAGCGAGCGC GTTTTTTGCC AGCGATTGCA CTGATAAACC AACATACCCA AGTGGTTAAT
GTCGATAGCG GCATTGACTA CCGTTTGCGT ACTCTTAAAC AAGCTGAGAT TTATCACTTC
CCTCTGGATC AAACGGCCAA CGATAACCTT TCAGTCTATT TTGCGCAGCT TGCCCCTGAA
GAGTGCCAAC ACGATGATGC TATTACCATA AAGGGCCGAA AAATTCCCAC GGTGCATCAC
GCTGAAGGCG TAGCCATGTT TGAGTTTCGC GCCTTATGTG ACGGCCCTCG TAGCCAAACA
GATTACATGG AGCTGAGTCG CTGTTATCAC TCAATTTTAC TGGCAAATGT GGAGCAAATG
GGCAAATCGG TGGATGATAT TGCCAGACGC TTTATCGCCA TGGTTGATGA GTTTTATGAG
CGTAACGTGA AGTTGATCAT GTCAGCAGAG GTTCCCCTTG AAGAACTTTA CACAGAAGGC
GCATTAAATT TCGAATTTCA TCGATGCCTT AGTCGATTGA AAGAAATGCA ATCACATGAT
TATTTAGCGA CTGAGCATTT ACCATAA
|
|---|
| Protein sequence | MSASTPWQKY QSDLQRDDFH SDPAQANAVK QLQRLYDDLV APDKEPSLWT KVKFVLGKDD
KAQSIKGLYF WGGVGRGKTY LVDTFYDCLP FEKKMRVHFH RFMHRVHEEL KSLGGQSDPL
KIIAAKFASE AKVICFDEFF VSDITDAMIL GTLMEEMFAR GIVLVATSNI IPDELYRNGL
QRARFLPAIA LINQHTQVVN VDSGIDYRLR TLKQAEIYHF PLDQTANDNL SVYFAQLAPE
ECQHDDAITI KGRKIPTVHH AEGVAMFEFR ALCDGPRSQT DYMELSRCYH SILLANVEQM
GKSVDDIARR FIAMVDEFYE RNVKLIMSAE VPLEELYTEG ALNFEFHRCL SRLKEMQSHD
YLATEHLP
|
|---|
| |