| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0550 |
|---|
| Symbol | |
|---|
| ID | 4172237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 640941 |
|---|
| End bp | 641672 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638053552 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_660133 |
|---|
| Protein GI | 109896878 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0217] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.105783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAGAA AGTTTGAAGT ACGTAAGGTA GCGATGGCAA AAACTGCTGG CGCAAAAACC
AAAGTTTACT CGAAATACGG TAAAGAAATT TACATGGTTG CTAAGAACGG CGGCACAGAC
CCTCAAGCCA ATTTGTCATT GCGCCGCCTT ATCGATAAAG CAAAAAAAGA CCAAGTACCC
AGCCACGTTA TTGACAAAGC AATTGATAAA GCCGCTGGCG GTGCAGGTGA AGACTTCACC
CCAGCACGCT ATGAAGGCTT TGGCCCAGGC GGCTGCATGG TTATCGTTGA TTGCCTAACC
GATAATAACA ACCGAACTAT CACAGATGTA CGTAACTGTT TCACCAAAAC AAACTCAAAA
ATAGGTGTGA CAGGTACAGT AAGTCACATG TTTGACCATC AAGCTGTGTT CTCTTTCCCT
GGCGATGACG AAGACGCTGT TTTAGAAGTC TTAATGGAAG CGGACGTGGA TGTAACGGAA
GTAGAATGTG AAGAGGGCGT GATCACGGTT TTTGCCCCTC ATACTGAATA CTTTAAAACC
CGCACAGCAC TAACCGATAA CAACCCAGAA CTTGAATTCG ATGCAGATGA AATCACCTTT
GTGCCGCAAA CAGAAACAGT GGTAACAGGC GAAGATGTCG CCACGTTTGA TAAGTTTATG
GATATGCTGG AAGATTGTGA TGACGTGCAA GACGTATATC ACAACGCTGT GGTTGAGCGC
GAAGGCGAAT AA
|
|---|
| Protein sequence | MGRKFEVRKV AMAKTAGAKT KVYSKYGKEI YMVAKNGGTD PQANLSLRRL IDKAKKDQVP
SHVIDKAIDK AAGGAGEDFT PARYEGFGPG GCMVIVDCLT DNNNRTITDV RNCFTKTNSK
IGVTGTVSHM FDHQAVFSFP GDDEDAVLEV LMEADVDVTE VECEEGVITV FAPHTEYFKT
RTALTDNNPE LEFDADEITF VPQTETVVTG EDVATFDKFM DMLEDCDDVQ DVYHNAVVER
EGE
|
|---|
| |