Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0546 |
Symbol | |
ID | 4172233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 636328 |
End bp | 638007 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638053548 |
Product | Cl- channel, voltage gated |
Protein accession | YP_660129 |
Protein GI | 109896874 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0038] Chloride channel protein EriC |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCCTTA ATGCTTTTCG ACAAGAGCTG GCTACACCGC GCACCTCTAT TCAATTGTGC GTATTGGGTA TTATTGGCGG TGTTTGCGCT GCATCGGTGA TCATATTATT CCGCTTAAGC GTGGAATGGC TGCAGCTTAT TTATCTTGAT GAAGTGAATA ATTTTACGAC ATTATCTACT CTAGAGCGGG CGATCATGCC TGTTATAGGC GTAGTGCTTA TTTTGTGTGT TGCCTACCTT ACTGGTTTTA AGCATTACCG AATGGGTATT CCTTTTGTGA TCCACCGCGT TAAAAAACGC TTCGGACATA TCCCTTTTCG TACGACGGTC AATCAATTTT TTGGTGGTGC ATTCGCATTA GCGAGCGGCT TTTCTGTTGG TAGAGAAGGC CCATCGGTGC ACTTAGGCGC AGCAGGTAGT AGTTTTTTTG GACAATGGTT AAAACTGCCT GATAACAGTA TTCGCATCTT GTCGGGATGC GGAATCGCCG CTGGTATATC TGCTTCGTTT AATACACCTT TTGCTGCCGT CATTTTCGTA ATGGAAGTGG TACTGCGCGA ATATAAGATC CATATTTTTA TTCCTATCAT GTTAGCGGCG GCTTGTGGCA CCGTGATGAC CAGAGCGGTA TTTGGTCAAG CGCAAGAGCT CGACTTTATA GAATTTTTTG AATTCAGCCG CTGGATATAC CTGTATTTGA TTTTGTTTGG AATATTGCTC GGTGCGTTAG CGACTCTTTT CAACAATGCC TTGATGAAAG TTATGCATAT TTTTCAGCGT TTTAACATGA TAAAGCGCTT GCTTATTGCC GCCTTGATTA CCGGCGCAGT GGGTTACATA CTGCCCCAAG CGTTAGGCGC GCATTTCTTT TCTGTACATG ACATGGTGCT ACAGCAGCAA GATGTTGTTT TACTGGTAGC GGTGCTTTGC GCTAAGTTTT TTATCACTAT TATTGCCATT GGGCTAGGGG TTCCAGGTGG GATCATGGGG CCGGTATTCG TACTGGGTAT GTTAAGTGGA GCCTTATTGG CTGCCCCGTT GGGACTGGCT GTAGATAATA TGGAACAACT CAGCGGTAGC TTTGCTCTGC TTGGCATGGC CGGTTTGATG ACGTCTGTAG TGCATGCTCC GCTAGCCGCT CTGTCAGCCG TGATGGAGTT ATCCTATAGC CCTGAACTTA TCTTGCCCGC TATCTTAGTT ATTGTGCCTG CCTATGTAAC TTCGACTCAG TTTCTTGGAA ACAGCTCTAT CTTCATCCGC CAGTTGGATT ATCAAAAGTT GCCTTACAGT ACGTCATCTG TATTGGAAGC TCTGCAAAGA ACTGGCGTGC TAGCGGTGAT GGACAAAGAA TTTAAGTTGT TCAATAACGC CCAACAACAC CATATTTTAC AATTTTTAGA GACATCACCA ACACACCCAG TGGTGCAGCG AAACAGTGTT GAAATTGACG TGCAGTATTC GTTAGTTCAA TACGATATTA GTCTTAGCAG AGAAGAATCA TCCTTGGCTT TTTATGCCAT GCAAGGGGTG TCGTTTCAGT CAACCCTGGG CGAAGTCTAT GAATTGCTGC AAAGCAGTCG TGAGGGCGCG GTGTATGTTT ATGAAAATGA ACCAAGTAAT ATCACAGGTG TGATTACTTG GAACATGTTG CGTAGCTATT TACACAAAGC ACAATATTAA
|
Protein sequence | MSLNAFRQEL ATPRTSIQLC VLGIIGGVCA ASVIILFRLS VEWLQLIYLD EVNNFTTLST LERAIMPVIG VVLILCVAYL TGFKHYRMGI PFVIHRVKKR FGHIPFRTTV NQFFGGAFAL ASGFSVGREG PSVHLGAAGS SFFGQWLKLP DNSIRILSGC GIAAGISASF NTPFAAVIFV MEVVLREYKI HIFIPIMLAA ACGTVMTRAV FGQAQELDFI EFFEFSRWIY LYLILFGILL GALATLFNNA LMKVMHIFQR FNMIKRLLIA ALITGAVGYI LPQALGAHFF SVHDMVLQQQ DVVLLVAVLC AKFFITIIAI GLGVPGGIMG PVFVLGMLSG ALLAAPLGLA VDNMEQLSGS FALLGMAGLM TSVVHAPLAA LSAVMELSYS PELILPAILV IVPAYVTSTQ FLGNSSIFIR QLDYQKLPYS TSSVLEALQR TGVLAVMDKE FKLFNNAQQH HILQFLETSP THPVVQRNSV EIDVQYSLVQ YDISLSREES SLAFYAMQGV SFQSTLGEVY ELLQSSREGA VYVYENEPSN ITGVITWNML RSYLHKAQY
|
| |