Gene Patl_0546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0546 
Symbol 
ID4172233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp636328 
End bp638007 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content45% 
IMG OID638053548 
ProductCl- channel, voltage gated 
Protein accessionYP_660129 
Protein GI109896874 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0038] Chloride channel protein EriC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCCTTA ATGCTTTTCG ACAAGAGCTG GCTACACCGC GCACCTCTAT TCAATTGTGC 
GTATTGGGTA TTATTGGCGG TGTTTGCGCT GCATCGGTGA TCATATTATT CCGCTTAAGC
GTGGAATGGC TGCAGCTTAT TTATCTTGAT GAAGTGAATA ATTTTACGAC ATTATCTACT
CTAGAGCGGG CGATCATGCC TGTTATAGGC GTAGTGCTTA TTTTGTGTGT TGCCTACCTT
ACTGGTTTTA AGCATTACCG AATGGGTATT CCTTTTGTGA TCCACCGCGT TAAAAAACGC
TTCGGACATA TCCCTTTTCG TACGACGGTC AATCAATTTT TTGGTGGTGC ATTCGCATTA
GCGAGCGGCT TTTCTGTTGG TAGAGAAGGC CCATCGGTGC ACTTAGGCGC AGCAGGTAGT
AGTTTTTTTG GACAATGGTT AAAACTGCCT GATAACAGTA TTCGCATCTT GTCGGGATGC
GGAATCGCCG CTGGTATATC TGCTTCGTTT AATACACCTT TTGCTGCCGT CATTTTCGTA
ATGGAAGTGG TACTGCGCGA ATATAAGATC CATATTTTTA TTCCTATCAT GTTAGCGGCG
GCTTGTGGCA CCGTGATGAC CAGAGCGGTA TTTGGTCAAG CGCAAGAGCT CGACTTTATA
GAATTTTTTG AATTCAGCCG CTGGATATAC CTGTATTTGA TTTTGTTTGG AATATTGCTC
GGTGCGTTAG CGACTCTTTT CAACAATGCC TTGATGAAAG TTATGCATAT TTTTCAGCGT
TTTAACATGA TAAAGCGCTT GCTTATTGCC GCCTTGATTA CCGGCGCAGT GGGTTACATA
CTGCCCCAAG CGTTAGGCGC GCATTTCTTT TCTGTACATG ACATGGTGCT ACAGCAGCAA
GATGTTGTTT TACTGGTAGC GGTGCTTTGC GCTAAGTTTT TTATCACTAT TATTGCCATT
GGGCTAGGGG TTCCAGGTGG GATCATGGGG CCGGTATTCG TACTGGGTAT GTTAAGTGGA
GCCTTATTGG CTGCCCCGTT GGGACTGGCT GTAGATAATA TGGAACAACT CAGCGGTAGC
TTTGCTCTGC TTGGCATGGC CGGTTTGATG ACGTCTGTAG TGCATGCTCC GCTAGCCGCT
CTGTCAGCCG TGATGGAGTT ATCCTATAGC CCTGAACTTA TCTTGCCCGC TATCTTAGTT
ATTGTGCCTG CCTATGTAAC TTCGACTCAG TTTCTTGGAA ACAGCTCTAT CTTCATCCGC
CAGTTGGATT ATCAAAAGTT GCCTTACAGT ACGTCATCTG TATTGGAAGC TCTGCAAAGA
ACTGGCGTGC TAGCGGTGAT GGACAAAGAA TTTAAGTTGT TCAATAACGC CCAACAACAC
CATATTTTAC AATTTTTAGA GACATCACCA ACACACCCAG TGGTGCAGCG AAACAGTGTT
GAAATTGACG TGCAGTATTC GTTAGTTCAA TACGATATTA GTCTTAGCAG AGAAGAATCA
TCCTTGGCTT TTTATGCCAT GCAAGGGGTG TCGTTTCAGT CAACCCTGGG CGAAGTCTAT
GAATTGCTGC AAAGCAGTCG TGAGGGCGCG GTGTATGTTT ATGAAAATGA ACCAAGTAAT
ATCACAGGTG TGATTACTTG GAACATGTTG CGTAGCTATT TACACAAAGC ACAATATTAA
 
Protein sequence
MSLNAFRQEL ATPRTSIQLC VLGIIGGVCA ASVIILFRLS VEWLQLIYLD EVNNFTTLST 
LERAIMPVIG VVLILCVAYL TGFKHYRMGI PFVIHRVKKR FGHIPFRTTV NQFFGGAFAL
ASGFSVGREG PSVHLGAAGS SFFGQWLKLP DNSIRILSGC GIAAGISASF NTPFAAVIFV
MEVVLREYKI HIFIPIMLAA ACGTVMTRAV FGQAQELDFI EFFEFSRWIY LYLILFGILL
GALATLFNNA LMKVMHIFQR FNMIKRLLIA ALITGAVGYI LPQALGAHFF SVHDMVLQQQ
DVVLLVAVLC AKFFITIIAI GLGVPGGIMG PVFVLGMLSG ALLAAPLGLA VDNMEQLSGS
FALLGMAGLM TSVVHAPLAA LSAVMELSYS PELILPAILV IVPAYVTSTQ FLGNSSIFIR
QLDYQKLPYS TSSVLEALQR TGVLAVMDKE FKLFNNAQQH HILQFLETSP THPVVQRNSV
EIDVQYSLVQ YDISLSREES SLAFYAMQGV SFQSTLGEVY ELLQSSREGA VYVYENEPSN
ITGVITWNML RSYLHKAQY