| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0539 |
|---|
| Symbol | |
|---|
| ID | 4173523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 630694 |
|---|
| End bp | 631629 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638053541 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_660122 |
|---|
| Protein GI | 109896867 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01772] malate dehydrogenase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTAG CGGTATTAGG TGCAGCTGGC GGTATAGGCC AAGCATTATC ATTGTTGTTA
AAAACTCAAT TGCCAGCTGG TACAGAGCTA GCCCTTTACG ACGTAGCCCC TGTCGTACCT
GGTGTTGCGG TTGATTTAAG TCATATCCCT ACTGACGTAA AAGTTGAAGG TTTTGGTAAA
GACGACCTAG CTAAAGCGTT AACAGGCAGT GACATTGTTC TTATTCCTGC TGGTGTTCCA
CGTAAGCCGG GTATGGACCG TTCTGATTTG TTCAACATCA ACGCTGGTAT CGTTAGAAAC
CTAGTTGACA GTGTTGCGGA CAATTGCCCA GAAGCTTGTT TGTGCATCAT CACTAACCCG
GTTAACACGA CTGTGGCAAT TGCTGCAGAA GCGTTGAAGG CTAAGGGTGT ATACAACAAG
AACAAATTAT TCGGTGTAAC AACACTAGAT GTTATTCGTG CTGAAACTTT TGTGGGCAAT
TTACGTGACT TGAACCCTGC CAACGTGCAT GTTCCTGTTA TCGGTGGCCA TTCCGGTACC
ACTATTCTTC CTCTGCTTTC TCAGGTGGAA GGTGTTGAGT TTACTGATGA AGAAGTTGCT
AGTTTGACGA CTCGTATCCA AAATGCAGGT ACAGAAGTGG TTGAAGCTAA GGCAGGCGGC
GGATCAGCTA CCTTATCAAT GGGCCAAGCC GCTGCTCGTT TCTGTTTGTC GCTTGTATCT
GCAATGCGCG GTGAAAATGT GGTTGAATAC ACCTATGTTG AAACCAACAG TGATGACGCA
CAATTCTTCT CACACCCAGT TCGTTTGGGC AAGAATGGCG TAGAAGAAAT TCTACCTTAC
GGTGAGCTAA GTGACTTCGA GCAAAAAGCA AAAGAGTCAA TGCTTGAAGG CCTACGTGGC
GACATAAAAC TAGGTGTTGA ATTCGTTAAT AACTAA
|
|---|
| Protein sequence | MKVAVLGAAG GIGQALSLLL KTQLPAGTEL ALYDVAPVVP GVAVDLSHIP TDVKVEGFGK
DDLAKALTGS DIVLIPAGVP RKPGMDRSDL FNINAGIVRN LVDSVADNCP EACLCIITNP
VNTTVAIAAE ALKAKGVYNK NKLFGVTTLD VIRAETFVGN LRDLNPANVH VPVIGGHSGT
TILPLLSQVE GVEFTDEEVA SLTTRIQNAG TEVVEAKAGG GSATLSMGQA AARFCLSLVS
AMRGENVVEY TYVETNSDDA QFFSHPVRLG KNGVEEILPY GELSDFEQKA KESMLEGLRG
DIKLGVEFVN N
|
|---|
| |