Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0528 |
Symbol | |
ID | 4173512 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 616438 |
End bp | 618273 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638053530 |
Product | signal-transduction protein |
Protein accession | YP_660111 |
Protein GI | 109896856 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.766846 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCATA TCCCTCAGCA CATCTTAGAG TTTTTGCGCG ATTCCGCTCC CTTTGAGGTG CTTGATGAGC ATGAAATGAA TAGGTTGGCG CAGTCCATTA CGGTCGCTTA TTTTAGCCAA GAAGATGTAA CGAATATTCT GAAACAGCAG CAAGGGGGAT TGTTTCTTAT CTGCAGTGGG CAATATTCAG TTAAGGATTC CGCTGAATCA GAACGCCACG TAAGTGATGG GGATTATTTC GGCTGTGACA ACTTATGGCA AAAACAGCCC AATAAAATAG CAGTCACTGT CGATAGCCCG GGGTTAGTGT ATTGCATCCC GAAAAAAAGT TTCGCCCAAT GTGTTGCTAG CCACCCAAGT ATTGAAGTTT TCTTTCGAAA TTATACCTCT GAACAAATTT ATAGTGACCA TGTAGATGAC TCAAAATCTA TGTGGCTTTA CAAGCCGATA AGTGAAGTGA TTTCTGACGG GGTTGTGAGC GAGGATATCA ACAGCTCAAT TTTGCAAGGG GTGCAAGTTA TGTCAAAAAG CGGCGTTTCT TCTCTTGTAA TCACGGATAA CCAATTACTG GTGGGTATAC TAACTGACCG AGATATACGA AATCGCGTGG TGGCGCAGCA AACTGATGTG AACCTTGCGG TTAGTGAAAT AATGACGCGA GACCCAGTGA AAATTAGCGA TCAGCGGACA TTATTCGATG CCTTGTGCGT CATGACCGAG CACAATGTGC ACCATTTACC CGTCGTGGAC AAAAACAGCG GGGTTCCTCT TGGGATGTTG ACGGCGAGCG ATATGATACG TCATCAAAGA GGGAATGTGC TTTTCGTTAT TAACGAGTTA ACAAAAGCGC CGTCTTTGTA CGAATTAACA AGACTTTCAT GGCAACTACC ACATTATTTT TCGAAACACG CTAAACGTCT CGGCGACTTT GATATTGCCG GCAAGGTATT GTCTCAGGCA ACGGATATTA TGACGCGAAA GCTCATTGGC TTTTATCAGC AACAGCATGG TGAAGCACCG ATGGAGTTTT GCTGGCTTGT TTACGGCTCT CAAGCGCGAG AAGACCAGAC CATGGGATCT GATCAAGACA ACGGATTACT GTTCGCCACA GAGCCGAGCC CTGAGCAATC TGCCTATTTT GCAGATATGG CTGAGTACGT ATGCAGGGGC CTAGATAAAT GCGGTATTAA ATTGTGCACT GGAAATATTA TGGCCAGTAA CCCAGCATTG CGTTTGTCAA TAAAACAAGC TGTTCAGCAA GCGCAAAGTT GGGTGCGGGA GCCGAGCCCA GAAGCTATTT TAAACTGCAA TATATTTCTT GATGTACGCG CAGTGGCAGG AAATCGGTTT TTGCTTTCCC AATTACATGT GGAACGTAAG GAGTTACTCA AACAATCGAG ATTTATTGCC GCGCTTACAC GCCACGCAAG TGATGGGCAT GTCCCGTTAT CTATGTTTCA GAAATTTGTG TATAAAAAAG GATTACCTAA AAAAGACTGC ATCGATATGA AAAATAGTGG AGTGGCGATC ATCAATAACC TAGTGCGGAT TTACTCCTTA GCCAATGGCT TAACCATGCC ATCCATTCCT CATCGACTAG AGGGGCTGTT GTCACACGCA GGGTTATCGA GCAAAGACGT CAAAAATCTG CGTGATATAT GGCTGTTTCT TAATCGCCTA CGGTGGCGTC ATCAAATTCA AAATAAGGTG ACTGACAACT ATGTTTCGAT CAGCGATTTG TCGTCTATTG AGAAATATCA ATTGAAAGAG GCAATGCGCG TTATCCGAAG AACACAGCAA GCCGCTGTGT TTAAATTTGC CGGTGGTTTA GGTTAA
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Protein sequence | MNHIPQHILE FLRDSAPFEV LDEHEMNRLA QSITVAYFSQ EDVTNILKQQ QGGLFLICSG QYSVKDSAES ERHVSDGDYF GCDNLWQKQP NKIAVTVDSP GLVYCIPKKS FAQCVASHPS IEVFFRNYTS EQIYSDHVDD SKSMWLYKPI SEVISDGVVS EDINSSILQG VQVMSKSGVS SLVITDNQLL VGILTDRDIR NRVVAQQTDV NLAVSEIMTR DPVKISDQRT LFDALCVMTE HNVHHLPVVD KNSGVPLGML TASDMIRHQR GNVLFVINEL TKAPSLYELT RLSWQLPHYF SKHAKRLGDF DIAGKVLSQA TDIMTRKLIG FYQQQHGEAP MEFCWLVYGS QAREDQTMGS DQDNGLLFAT EPSPEQSAYF ADMAEYVCRG LDKCGIKLCT GNIMASNPAL RLSIKQAVQQ AQSWVREPSP EAILNCNIFL DVRAVAGNRF LLSQLHVERK ELLKQSRFIA ALTRHASDGH VPLSMFQKFV YKKGLPKKDC IDMKNSGVAI INNLVRIYSL ANGLTMPSIP HRLEGLLSHA GLSSKDVKNL RDIWLFLNRL RWRHQIQNKV TDNYVSISDL SSIEKYQLKE AMRVIRRTQQ AAVFKFAGGL G
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