| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0527 |
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| Symbol | |
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| ID | 4173511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 614383 |
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| End bp | 616209 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638053529 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_660110 |
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| Protein GI | 109896855 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAA TGAGTCGCAC CTTACAGATT ATTTCTATTC AGCACGAGCT AGCCATGAGT
ATCGGATTGG ATCTCAACCT AGATAAGATG CTTCAGCTAT TTCTCGATAG AGCCAAAAAA
CGTCTGAGTT TACGCAGCGC AGTAGTATTT AAAGAAGCAC CGCGCTCAAG AAATGATTCA
GACATACTCT GCTACCCCTA TAACCATCGC CCAGATGATA CAAATGATTG GTTAACCGAG
CAGGTGTACG AGTTTAGCCA GCTCAACGTG CAAAGCGTCT GCCGTCAGCG CGGTGATACT
TATTATTATC TGTTTAAAAT TCCTAAATTT GGTGCAATCA GTTTCGAACG CAAACGGACG
CCTATCGATG ACATCGTTCT TAACGCGCTA ATGCCCCTAT TTGGTCGCTT GGCTGTGAGT
TGCCAAGCTT GCTTAGAGCA TCAAAATTTG GTGGATGAAA TTAGTAATCG TAAAGCGGTA
GAAGAGCAGC TTAGATTGCA AACTTATCAA GACGTTTTGA CTGGCTTACC TAACCGAAAA
ATGCTCAATA TCAACTTACA AAGTTTACTG ACGAATGCTC AGCAGCATGG TCAATATGGG
GCCGTGTTTT TTATCGACTT AGACCGTTTC AAGTTAATAA ACGATACTCT AGGGCATTCT
GTTGGTGATG AATTGCTGAT TAATATCACA AGCAAATTAA AAGCCTGTAT CCGCCGTGAT
GATACCTTGG CCAGAGTAGG CGGGGATGAG TTCATCTTGC TACTTGGCGA CATAGGGCCG
ACGGAACAGA GTGCAGTTGG TAAGGCTACC AAAGTAGCGG ATAAAATGCT TAGCCTCACT
CGGGATAGTA TTGAGTTATC CCGTTGCGCT GTGTTTACCA GCTTTAGTAT CGGCATCGCC
CTGTTTCCAT CACCTGAGCT CAATGCCAAT AAATCAATTG CTGAGCAAGC TAAGCAACTT
ATAAAACACG CTGATATTGC CATGTACAAA ATTAAACACA CTAGTCGCAA TGATTATTTA
TTTTACCGTC ACGAATTACA AATCATGGCG ACTTTTCGCT CTGAGGTAGA GCAGCGTCTA
CATGTGGCTT TACGTGAAGA AGCATTCGAG TTGTATTTTC AGCCTATGGT TAATGTGGCA
GGCGAGATAG TGGCCGCAGA GGGATTGCTG CGCTGGCATG ATGAAAAACT AGGCTGGGTT
GGGCCTCAGG AATTCATTCC AGTGGCAGAG GAATGCGGTT TGATTGTAGA AATCGGTCAA
TGGGTCTTGC GCCAGACGTG TGTATTGATT TCGCAGCACC TTGATTGGTT TTCTGAAGGA
AATTTGCGCT ACATCAGTAT CAATATTAGC CCGCGACAGT TTAGTCAACC CCACTTCGTT
GCTCAAGTGT TGGAGATAAT TGAGGAATTC ACGTTCCCCC ATTCGTATTT ACGCTTGGAA
ATAACGGAAG GCGTTGCGAT GGAAAACATT ACTAGCGCTA TTTATATTAT GAATGCGTTA
ATTGTGCATG AGCTGTTTTT TATGTTGGAC GATTTTGGTA GCGGCTATTC GTCGCTTTCT
TATTTACATC AGTTGCCGCT AAAGTCAGTC AAAATAGATC GTAGTTTTGT GTCGAAAATA
GATCAAAACA CGGATAACCA AGTTATCGTT GAGGCGATTA TTTATATCTC TCAGCACTTT
TCATTAGAAT GTGTTGTAGA GGGCCTAGAA ACATCTCAAG AACATGCTTA TTTTCATGAA
AAGGATGTTG CAGCTATTCA AGGTTTTCAT TTCTATAAAC CCTTACCAAG GGAAGCGTTT
GTCAACTTGC TTGAGTCGAC CAATTGA
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| Protein sequence | MSEMSRTLQI ISIQHELAMS IGLDLNLDKM LQLFLDRAKK RLSLRSAVVF KEAPRSRNDS
DILCYPYNHR PDDTNDWLTE QVYEFSQLNV QSVCRQRGDT YYYLFKIPKF GAISFERKRT
PIDDIVLNAL MPLFGRLAVS CQACLEHQNL VDEISNRKAV EEQLRLQTYQ DVLTGLPNRK
MLNINLQSLL TNAQQHGQYG AVFFIDLDRF KLINDTLGHS VGDELLINIT SKLKACIRRD
DTLARVGGDE FILLLGDIGP TEQSAVGKAT KVADKMLSLT RDSIELSRCA VFTSFSIGIA
LFPSPELNAN KSIAEQAKQL IKHADIAMYK IKHTSRNDYL FYRHELQIMA TFRSEVEQRL
HVALREEAFE LYFQPMVNVA GEIVAAEGLL RWHDEKLGWV GPQEFIPVAE ECGLIVEIGQ
WVLRQTCVLI SQHLDWFSEG NLRYISINIS PRQFSQPHFV AQVLEIIEEF TFPHSYLRLE
ITEGVAMENI TSAIYIMNAL IVHELFFMLD DFGSGYSSLS YLHQLPLKSV KIDRSFVSKI
DQNTDNQVIV EAIIYISQHF SLECVVEGLE TSQEHAYFHE KDVAAIQGFH FYKPLPREAF
VNLLESTN
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