| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0520 |
|---|
| Symbol | |
|---|
| ID | 4173464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 602825 |
|---|
| End bp | 604510 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638053522 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_660103 |
|---|
| Protein GI | 109896848 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG4564] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.859036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGTT ATATATCCAT TAAGAATCGC CTTCTGATCA TCTCAATTGT TCCCTTGGTC
AGTCTGGTAT CAATCCTCTT GCTGATTATT ATTTCACAGG TCACTGCGCT GACGGGGACC
GTGGAAAAGT CCGCGCAAAC TTTACTCATT GAGAGCAAAA AAGGGGAACT TAAAAACACC
GTAGAATTAG CTTACAGCGC GGTAAAACCG ATGTATCAAG AAGGTGGCGA CAAACGCGAG
GCAATTGAGA TCCTTAAGCG ACTAACATTT GGTAAAGACG GATATATATT TGGTTATGAT
GATAAAGCAG TACGTCTATT TAACGGTGAA AATGAAGCAG GTATTGGCCA GAATTATTAT
GACTTTAAGG ACGTAAACGG GATCTATCTG ATTAGAGATT TAATTGCTGC GGGTCGCAAT
AACAAATTTG CTCAAGGGAA TGAATTTGTG ACTTATCATT TTCCTCGATT GGGGGAGAAT
ACGCCGGCCG CAAAACTGTC TTACGCTATT TACCTTCCAG AATGGAAAAT GATGCTTGGC
ACTGGCTTGT ACATCGACAG CATTGATGAC CAAGTAAGCG TATTTTCGCA ACACATTGAT
GAATCCCGCG CAACATTAAT CACCTCAGTC ACCCTAGTCT CAGGAATATT ACTGCTGCTG
TTACTGATGC TTGGACTGCT TTTAGTCCGC TCGATCCTTT CACCGTTAAA CACCGTAACG
CAATCGATAA AAGAGCTCTC TAGTGCTGAG GGAGACCTAA CCCGCCGTCT AAATCTCAAC
GACAACCACG AGCTAGGTGA ACTCGCGAGT CACTTAAATA CCCTACTGAG CAAGCTACAG
ACAATCATTG GTAATGTGCG CGATATCAGC TTACGAGTGA AACAAAATAG TGATGAGCTT
GGCACGCAAA CGCTTTCGAT AAAGGATTTA AGTATTAAGC AACATAACGA AATTGACCAA
GTCGCCAGCG CTACCTCACA GATGTCAGAA ACAGCCCATC AAGTTTCTGT TAACGCTGAT
GCCGCCGCTT CAGCAGCACT AGAAGCGGAT AACAATGGTC ACCAAGCGAT GCGAAGTGTC
GAGCAAAGCT GTCACGAGAT GTCACTTTTA CTCAATGAGT TGTCGGCCAC GGAAGAAGTC
GTCACACAAG TAGGTGATGA CGTAGAAAAC ATCGGTGCTG TGCTATTAGT TATCGAAAGT
ATTGCAGGGC AAACAAACTT GCTGGCGCTG AACGCGGCTA TTGAAGCCGC TAGAGCAGGA
GAACAGGGCC GAGGCTTCGC AGTAGTGGCT GATGAAGTAA GGAACTTAGC CAGTAAAACA
CAAGGAAGCA CCGAAGAAAT ACAAAATATG ATCGCCAAGT TACAAAGTGG TTCACGCGCT
GCAGTGGTAG TGATGAGCGA TAGCAAACAA CGCAGCAATG AAACCGAAAA AAGCATTAGC
GCCACGGCCG TATCATTGGG CGAAATATCT AAATCAGTTG CCACAATGAA TAATCTTAAT
GTTCAAATAG CCACCGCCGC CCGAGAACAA AGTATTGTAG GCAAAGAAAT CAGTCAGCGT
ATTATTGATA TATCAAACCA AACAACAGAG CTCAGTGGTA TTGCGGTTAA AAATGGTAAA
ACTGCGGAAA GTTTGCGCCA AAAAACGGCC GAGCTAGAAG GGCTAGTCGG CCAGTTTAAA
GTATAG
|
|---|
| Protein sequence | MFSYISIKNR LLIISIVPLV SLVSILLLII ISQVTALTGT VEKSAQTLLI ESKKGELKNT
VELAYSAVKP MYQEGGDKRE AIEILKRLTF GKDGYIFGYD DKAVRLFNGE NEAGIGQNYY
DFKDVNGIYL IRDLIAAGRN NKFAQGNEFV TYHFPRLGEN TPAAKLSYAI YLPEWKMMLG
TGLYIDSIDD QVSVFSQHID ESRATLITSV TLVSGILLLL LLMLGLLLVR SILSPLNTVT
QSIKELSSAE GDLTRRLNLN DNHELGELAS HLNTLLSKLQ TIIGNVRDIS LRVKQNSDEL
GTQTLSIKDL SIKQHNEIDQ VASATSQMSE TAHQVSVNAD AAASAALEAD NNGHQAMRSV
EQSCHEMSLL LNELSATEEV VTQVGDDVEN IGAVLLVIES IAGQTNLLAL NAAIEAARAG
EQGRGFAVVA DEVRNLASKT QGSTEEIQNM IAKLQSGSRA AVVVMSDSKQ RSNETEKSIS
ATAVSLGEIS KSVATMNNLN VQIATAAREQ SIVGKEISQR IIDISNQTTE LSGIAVKNGK
TAESLRQKTA ELEGLVGQFK V
|
|---|
| |