| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0507 |
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| Symbol | |
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| ID | 4173451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 585269 |
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| End bp | 588406 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053509 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_660090 |
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| Protein GI | 109896835 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCTTT GGCTGGCTCT ATTGGTTTGC TTGATGGCCT TGGGGGGGGT ATCAACTGGC
AATGCCCAAC AAGTCGAAAG TCTTGTGCAA CTAATCTCTA AAGATCAGGA AGTTAGCCTG
TCATCATCTA TCAGCGTCAT GCAAGAAGAC GGCATTGAGC TAAGCGTGAC ACAAGCCCGA
GACATGCTCT CCCAGTTTGT TTGGCACTCA GGCGGCAACC CCAATTATGG TTTTTCTGAA
CACGGTGTAT GGCTATACAC CACCTTGAGT AATGTGACTA CCACAGACAA ATGGGTGGTC
AGTGTTGCGT TTTCGCAGCT TGATAATGTC GATATGTACC TGATGCAAGA TGGGCAGATT
CTTGCTTCGA GTTTTCAGGG CAAGCTAGGC ATGAAAACTC ACTATCGCTT ACCTATGATG
AAAGTCGAAT TGCCCTATGC ACAAACTGTT GAATTGTTTG TGCGCTTGCA GAGCCAGCAT
AGCAGTTTAG TTGCCCCCAT TAGCATCCAA TCGAGTACTT CTCACGAAAT GCAGAGCTTT
TATGATAGCT TGTTGTGGGG GTTATTTTAC GGTGGCTTGA TTATTTTAGC CATATACAAT
TTGGTGGTCT ATTTTGCTCT TCGTGAGTCT AGTTTATTGG CCTATGTTGG GTATATCTGC
ACAGTCATTG TTTGGCAATT CGTGTGGGGA GGGCACGCCA ATATGATGCT CCCCCAAGCA
TTATCGCATT GGTTCGACAC GCATACGGAC ATCATTTTTG TGCTGATTGG TATTGGCTCT
GGGTTATTCA CGATTGTGTT TTTAGAAGCC AAAGTTACGG CACCTAAAAC ACTCCCCTTC
ATTAAAGTCA GCATCGGGCT TTTAGCGTTA ATGGGCTTAT GCTCTATGGT GAATTTGTTT
CCGCCCGTTT GGCAAAATGC CGCCGTGTAT GTTGTCAGTA TGCTGGCCAT TAGTTGCTAC
ACCTATGCTG GGTTCGAAAG CTACTCAAAT CAGTTTTATG CCGCGCGCTA TTTTATTTTC
GCATGGAGTA TTTTAGCCAC ATGCGCATTA ATAGGTATGT TTAGCTTAGT GGATATGCTG
CCCTCTAATT TTTTCACTAC CTATTGTTTT CAGTTCGGTG TGTTCTTTGA ATCCGCATTA
TTTTCACTGG CCTTGATGGA CAAAAGCCGC CACCAACTTG AGATTGAAGT ACAGCAAGCA
ACCAATGATT TACGTAACAA TATTGAATTG GTGGAAGAAC AAAACGTTCG ACTAGATATT
GCTCGTAAAG AGGCAGTGGC TGCGAGCAAC GTTAAATCTC AGTTTCTGGC TAACATGAGC
CACGAAATTA GAACTCCTCT CAATGCAATC CTCGGTTTTA GTAAAGAGTT GCAACAAGGC
GATTTTTCTG CCGATAAACG CGACCAAATC AACATTATTA ACGCTGCCGC TGACAACCTG
ATGACCATAG TTAACGACGT GCTGGATGTG TCGAAAATTG AAGCCGGTAA ACTCCAAATT
AACAGTCATC CTTTTTCAAT AAACGAGTTA CTCGAAGAGA TGATAGGCGT GATGGCCAAA
TCCGCTCATC TAAAAGGCCT TGAGTTTGTG TATGACATAG AGCCATTGCC ACTCAAGCTG
ATAGGCGACA GCTATCGAAT ACGCCAGATT CTCAATAACT TGTTAGGCAA CGCCCTGAAA
TTTACCGATA CCGGACACAT TGGTTTAGCG GCGTCTGGTA AAGTATTAGA GCATGGTATT
TTTGAGTTAA ACATTAAAAT TGAAGACACG GGTATCGGTA TAAGCCGAGA AGATAAGCGC
AAACTATTTA CCGCATTTTC ACAAGTTGAT GATGCGCTCA ATCGCTCTTA CCAAGGCACT
GGGCTAGGTT TGGTTATCTG TAAAGAGTTA GTCAAATTAA TGCACGGGCA ATTGTCGCTA
CAAAGCTCCC CTGGTCAAGG CAGTACCTTT AATGTCACGG TTCGCATGAA TATTTTAAAC
ACCAAACCCA GTATTTCGCC AAAAAGCGAC TGGCAAGATC AAACGGTATT GCTGTACGAG
CCTTACCCCA ACGCGCGCTT CACTGCCAGT AAATTACTCA AATCCCTGGG GGCAATTGTC
ACCAGTGTCG ACTCAATTGC CTTTTTGCAA ACCTGCACAA AAGCTTTTGA TTGCATGATA
TTTTGCATAC ACCCACATAA TCAAGCCGCC AATGAACAGG CCTTTTCTAG CGCAAGCAAC
ATTGTAGTTA AACATAAGGT GTTATTGTGC TCAGGCGAGG ATTCTTGTTG CCGCTTTTCC
CAATTTACTG GGCAATTTAC CCCTCAACTG CGCTTACCTC TGACCCCAGG TAAGCTGAAA
GAAATTATGC ACAAGCCCAC GCATGCACCG GTTAATGAGT TGCAGAAGCG TTTGCAAGAT
TTGCCTGCAG TTACCGTGCT GGCGGTAGAT GATATGGAAA TGAATTTACG CTTGTTAAGC
ACGTGGCTTA AGCCATCACG CCTTGAGCTT AAACTCGCGT TCAGTGGTCA AGATGCAGTC
AATTTATGCA AAGAAAGCGA ATTTGATCTG ATATTGATGG ATGTGCAAAT GCCCAATATG
GATGGCTTAC AAGCAACCAA ACTAATTCGA GAAACGAAAC TTAATTTTGG CACCCCCATT
ATTGCAGTAA CGGCCCATGC GTTTAAGGAA GAACAGCAGC GCCTATTAAA TAGTGGGATG
GACGATTATT TGCCAAAACC TCTCGACCTT TCCGACCTAG TTGATTTAAT TAATCGCTGG
TGCCATCAAG GGGTGGAAGA CGACGAACAT ATTGAGGTGT TTAATTGGCC CTTGGCACTC
AAACGCGCCA ATCAAAATGT TGACGCTGCC AGAGATCTGT TCAACCAATT CATTAAGCAA
CTTCCTTCAT TCGAAAGCAA ATTTGAACGG CTACAGGCGC ACCCTGAACA CAATGAACTG
CAACAAGTTG TGCATGCACT GCACGGTGTA TGCTGCTATA CGGGGGCGGT AGCGCTGCAT
AGCAGTTGTT CAGAATTAGA GAGCCAGTTG AAGCGAGAAC AATTTGATAA GGTGCCCTCG
ACTTTGGCCA GACTGATTAA CGATGTTAAA GCCCTGCTGA GACAAGAGAA GGACATCAAA
CACAACATCA GGGACTAG
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| Protein sequence | MQLWLALLVC LMALGGVSTG NAQQVESLVQ LISKDQEVSL SSSISVMQED GIELSVTQAR
DMLSQFVWHS GGNPNYGFSE HGVWLYTTLS NVTTTDKWVV SVAFSQLDNV DMYLMQDGQI
LASSFQGKLG MKTHYRLPMM KVELPYAQTV ELFVRLQSQH SSLVAPISIQ SSTSHEMQSF
YDSLLWGLFY GGLIILAIYN LVVYFALRES SLLAYVGYIC TVIVWQFVWG GHANMMLPQA
LSHWFDTHTD IIFVLIGIGS GLFTIVFLEA KVTAPKTLPF IKVSIGLLAL MGLCSMVNLF
PPVWQNAAVY VVSMLAISCY TYAGFESYSN QFYAARYFIF AWSILATCAL IGMFSLVDML
PSNFFTTYCF QFGVFFESAL FSLALMDKSR HQLEIEVQQA TNDLRNNIEL VEEQNVRLDI
ARKEAVAASN VKSQFLANMS HEIRTPLNAI LGFSKELQQG DFSADKRDQI NIINAAADNL
MTIVNDVLDV SKIEAGKLQI NSHPFSINEL LEEMIGVMAK SAHLKGLEFV YDIEPLPLKL
IGDSYRIRQI LNNLLGNALK FTDTGHIGLA ASGKVLEHGI FELNIKIEDT GIGISREDKR
KLFTAFSQVD DALNRSYQGT GLGLVICKEL VKLMHGQLSL QSSPGQGSTF NVTVRMNILN
TKPSISPKSD WQDQTVLLYE PYPNARFTAS KLLKSLGAIV TSVDSIAFLQ TCTKAFDCMI
FCIHPHNQAA NEQAFSSASN IVVKHKVLLC SGEDSCCRFS QFTGQFTPQL RLPLTPGKLK
EIMHKPTHAP VNELQKRLQD LPAVTVLAVD DMEMNLRLLS TWLKPSRLEL KLAFSGQDAV
NLCKESEFDL ILMDVQMPNM DGLQATKLIR ETKLNFGTPI IAVTAHAFKE EQQRLLNSGM
DDYLPKPLDL SDLVDLINRW CHQGVEDDEH IEVFNWPLAL KRANQNVDAA RDLFNQFIKQ
LPSFESKFER LQAHPEHNEL QQVVHALHGV CCYTGAVALH SSCSELESQL KREQFDKVPS
TLARLINDVK ALLRQEKDIK HNIRD
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