Gene Patl_0501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0501 
Symbol 
ID4172728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp578895 
End bp579488 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content44% 
IMG OID638053503 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_660084 
Protein GI109896829 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGTTTG ACATTCTCAC CGCGCTTATG CTGTTTGCAC TTGTGTCTTC AATTACACCT 
GGGCCGAACA ACTTAATGTT GATGGCATCA GGCGCCAACT ATGGTGTTAA GCGTTCACTG 
CCGCATATGT TCGGTGTGTC ACTGGGATTT ACCTTAATGG TGGCGCTGGT GGGGTTAGGG 
ATCATGCAAA TATTTGATAT GTTTCCTGTT ACCTACCAAA TTTTAAAAGT GTTGAGTGTC 
ACTTATTTAC TCTACTTGGC CTATAAAATT GCCACGGCTT CAAACGCTAA ACAGAGCAAT 
ACAACTGATG CAAAGCCGAT GACCTTTTTT CAAGCGGTGA TGTTTCAGTG GGTGAACCCC 
AAAGCGTGGA CGATGGCATT AACGGCTATT AGCGTCTATG CACCCTCGAA AAGTGTGTTA 
GCTGTGGTGA TGGTTTCAGG TGTTTTTGGT GCGGTGAATT TCCCCTGCAT TAGTGGCTGG 
ACAATTTTAG GCCAAAAAAT ACAAGTCTTT TTAACGGATA ACAAGCGCCT TAGGGCGTTC 
AACTTCACCA TGGCAGGGCT GTTGGTGTTA TCTCTTTATC CTGTGTTTTT ATAA
 
Protein sequence
MTFDILTALM LFALVSSITP GPNNLMLMAS GANYGVKRSL PHMFGVSLGF TLMVALVGLG 
IMQIFDMFPV TYQILKVLSV TYLLYLAYKI ATASNAKQSN TTDAKPMTFF QAVMFQWVNP 
KAWTMALTAI SVYAPSKSVL AVVMVSGVFG AVNFPCISGW TILGQKIQVF LTDNKRLRAF 
NFTMAGLLVL SLYPVFL