| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0488 |
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| Symbol | |
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| ID | 4172715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 562332 |
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| End bp | 564803 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053491 |
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| Product | ATP-dependent helicase HrpB |
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| Protein accession | YP_660072 |
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| Protein GI | 109896817 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.531683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACACAC AATTACCCGT CGAAGATACC CTACCGGCAC TGCACGATGG CCTGAACAAC
AATGATGTCA TACTGGTTGC CCCGCCAGGC GCAGGCAAGT CAACCCGTGT GCCATTAGCT
TTATTGCAGC ACAGTACGTT TGCCACACGA AAAATCATTA TGTTGCAACC AAGGCGTATT
GCCGCACGAA ATATCGCCCA CTATCTAGCC AAGCAACTGG GGGAGGAAGT AGGGCAAACA
GTAGGATATC GTATACGTGG TGATAGCCGT GTTAGCAAGG CGACCCGTCT CGAGATTGTT
ACTGAGGGCA TACTGACCCG CATGTTGCAA AATGACCCAG AATTATCGAG CGTGAGTCTG
GTTATTTTCG ACGAGTTTCA TGAGCGCAGC ATGCACGCCG ACTTTTCGTT GGCATTGTGC
CTAGAAGTGA AAGACGCCTT ACGCGACGAC TTGCGCTTAT TGGTGATGTC AGCCACCTTG
GACGTTTCAA GCTTAGAAAA ACTGTTGCCT AACGCTGATT CTATCGCTTG TGAGGGGAGA
GGTTACCCTA TTGAAACCTA CTACCGGCCA GATGCCACTG CGGGCTCTAT TGTAGATAAA
ACAGCACGTT TGACGTTATT CGCAGCCGCA GAGCATCAAG GAGACATATT GGTCTTTTTA
CCCGGCCAAG CTGAAATTCG TCGTTGTGAA AAAATACTTG CCCAATCACT TTCCAAAGGC
TGCCAAATAC ATTGTTTGTT CTCTCAACAA ACCTTAGCGG CTCAAGAAGC TGCGTTGCTA
CCCGACCCCC AAGGGCGACG TAAAATCATA CTCGCTACCA ATATTGCTGA AACCAGCCTA
ACCATTGAAG GTGTGAGTGT TGTGGTTGAT AGCGGTATGC AAAAAGGCGC GATTTACCAG
CTAAATAAAG GGCTTACTCA GTTGCGCAGT CAGATGATTT CAAAAGCATC AGCTATTCAG
CGCGCTGGCC GTGCAGGGCG TTTAGGACCG GGAGTGTGTT ATAGATTGTG GAGCAAAGAG
CAACACCAAC GTTTAGCTGA ACACGGCCAA GCCGAGATCC TCACTAGCGA CATATCTCCT
TTCTTACTTG AAGCCTGCGT TTGGGGGGCG CAAATTTCTG AGTTTGCGCT TATTGATATG
CCAAGTGATG CACAAATTGC TCAAGCTCAC AGCGTGTTAA TGGGCTTGCA AATCATCGAT
GCTAATTTTC AGGTTACTCC TCATGGCAAA GAGGTTCACT CGCTTGGCAG CCAAGCGCAT
ATTGCGACTA TGTTACTCAA GAGCAGCGAG CTCAGTGCAG GGCATCGAAG TTTAGCCTGC
GCTTTGGCGG CGCTGTTAGA AGATAAGGAT CCGCTTGGGG CTCAAGCTGG CAGCCTTTGT
TACGATCGAC TGACCCTATT ACAGCAACAT AAAAGTCACC CTTTGTGGCG AGCCATTCGC
CAGTGGCATA AAAAACTAGC ATGTGATGTC ACTCATTGGC CTTTAGAAGA TACAGGTGTA
CTACTTGGCT TTGCTTTCCC ACACTGGATT GCTAAAGCAA GTGACTCAGG TCGCTACGGG
CTTGTTGATG GGACGGGGGC TCAGCTCAGT GAACATGACT CGCTAATGGG CCAATCATGG
TTAGCGGTAG GGCAGATGAT GCTCACCAAT AGTGCGCAAA GCAACGCTAA AATCATGCTA
GCAGAGCCTC TTAGTCGACA GCAAATAGAC AAATATTTCA ATCATCTTAT CGACTCTGAA
ACGCGCTGCG AGTGGGATAG CTCTCGCTCG GCCATCGTAA CTCAATCTGT GCAGCGATTG
GGCCGAATTG TGCTTAAGAA AATGCCCAGC GCTAAGCCGA GCGTTGAGCA AATAACTGCT
TTATGGCATA AGCAAATTAA AGAGCGGGGC GTGATGAGCC TGCCTTTTAA CGACGCCGCA
TTGCAACTTA TCTATCGTTT ACGGATGGCT AAAGAGTACT TAACCGATGG GCAATGGCCG
GATGTCAGTG AGTTTGGGCT ATTAAGCAAT CTTCATCACT GGCTAATGCC ATATTTGCAT
GATGTGTTGA GTTGGCAACA ACTGTCGAAA TTAGACTTTT ATTCGTTATT ATTTAATCAA
CTAGATTACG CCTCGCAGCA GGCACTCAAT CAGTTATTTC CCACTAAAAT AACCGTGCCA
AGCACCAGTC GTATTAGCGT ACAGTATGAT GATGTAGGTG GAGCGTCTCT ATCTGTCAGG
ATGCAAGAAG TTTATGGTTT AGCGGACACC CCTAGTGTCG CTAGAGGTAA AGTGAAAATA
CAAATGATTT TGCTCTCACC GGCGGGTCGC CCACTGCAGC AGACCCAAGA TCTAGCCGGT
TTTTGGAAAG GCAGTTACAA AGAAGTACAA AAAGAAATGA AAGGTCGTTA CCAAAAGCAT
TTTTGGCCTG ACGATCCGGC TAATGCACAA GCTACCAGTA AGACAAAAAA GAAGATGAGC
AATACCCAGT GA
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| Protein sequence | MNTQLPVEDT LPALHDGLNN NDVILVAPPG AGKSTRVPLA LLQHSTFATR KIIMLQPRRI
AARNIAHYLA KQLGEEVGQT VGYRIRGDSR VSKATRLEIV TEGILTRMLQ NDPELSSVSL
VIFDEFHERS MHADFSLALC LEVKDALRDD LRLLVMSATL DVSSLEKLLP NADSIACEGR
GYPIETYYRP DATAGSIVDK TARLTLFAAA EHQGDILVFL PGQAEIRRCE KILAQSLSKG
CQIHCLFSQQ TLAAQEAALL PDPQGRRKII LATNIAETSL TIEGVSVVVD SGMQKGAIYQ
LNKGLTQLRS QMISKASAIQ RAGRAGRLGP GVCYRLWSKE QHQRLAEHGQ AEILTSDISP
FLLEACVWGA QISEFALIDM PSDAQIAQAH SVLMGLQIID ANFQVTPHGK EVHSLGSQAH
IATMLLKSSE LSAGHRSLAC ALAALLEDKD PLGAQAGSLC YDRLTLLQQH KSHPLWRAIR
QWHKKLACDV THWPLEDTGV LLGFAFPHWI AKASDSGRYG LVDGTGAQLS EHDSLMGQSW
LAVGQMMLTN SAQSNAKIML AEPLSRQQID KYFNHLIDSE TRCEWDSSRS AIVTQSVQRL
GRIVLKKMPS AKPSVEQITA LWHKQIKERG VMSLPFNDAA LQLIYRLRMA KEYLTDGQWP
DVSEFGLLSN LHHWLMPYLH DVLSWQQLSK LDFYSLLFNQ LDYASQQALN QLFPTKITVP
STSRISVQYD DVGGASLSVR MQEVYGLADT PSVARGKVKI QMILLSPAGR PLQQTQDLAG
FWKGSYKEVQ KEMKGRYQKH FWPDDPANAQ ATSKTKKKMS NTQ
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