Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0469 |
Symbol | rplC |
ID | 4171812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 547965 |
End bp | 548603 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053472 |
Product | 50S ribosomal protein L3 |
Protein accession | YP_660053 |
Protein GI | 109896798 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000509154 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGATTG GTCTTATCGG TCGTAAAGTT GGTATGACAC GCATCTTCAC TGAAGACGGC GTATCAATAC CAGTGACTGT TATAGAAGCC ACCCCGAACC GTGTTACTCA GTTACGTACT GACGAAACCG ACGGGTATAC AGCGCTTCAA GTAACCGCTG GCGACAAAAA AGCGAACCGC GTAAATAAAG CAGCAGCAGG TCATTTTGCT AAAGCTGGCG TGGAAGCTGG TCGTGGTTTA TGGGAATTCC GTTTAGACGG CAACGAAGGC GAAGGCATAG AAGTTGGCAG TGAAATCACT GTTGAAATCT TTGCTGAAAC CAAAATGGTT GACGTTGCAG GAACTTCTAA AGGTAAAGGT TTCCAAGGTG CTATTAAGCG CTGGAACTTT AGCCACCAAC GTAATTCACA TGGTAACTCA TTGTCTCACC GTGCTCCTGG TTCAATTGGC CAAAACCAAT CACCAGGTAA AGTCTTCAAA GGCAAAAAAA TGGCCGGTCA GATGGGAAAT AAACGTGTGA CAGTTCAGTC TTTGGATGTA GTACGTGTTG ACGCAGAGAA CAACCTTCTT CTAGTAAGAG GCAATGTTCC TGGAGCGCCA GGTGGCGACG TCATCATCAA AGCTGCAGTT AAAGCGTAA
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Protein sequence | MAIGLIGRKV GMTRIFTEDG VSIPVTVIEA TPNRVTQLRT DETDGYTALQ VTAGDKKANR VNKAAAGHFA KAGVEAGRGL WEFRLDGNEG EGIEVGSEIT VEIFAETKMV DVAGTSKGKG FQGAIKRWNF SHQRNSHGNS LSHRAPGSIG QNQSPGKVFK GKKMAGQMGN KRVTVQSLDV VRVDAENNLL LVRGNVPGAP GGDVIIKAAV KA
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