| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0465 |
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| Symbol | |
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| ID | 4171808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 540401 |
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| End bp | 541423 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638053468 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_660049 |
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| Protein GI | 109896794 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.254562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAAATC ACGATTTAGA GAATTCATTT AAACATCTAA AAAACACCAT CCCTTTATTG
CTTAAGCATA AGATCCCTGC CGTGCCGCTC AACTATGCCC TGTGGTACAC CTATGCAAGT
AATGAATCTG AATCCCTTAA TGAAACTCTT GATCATGCTT TGCAGCGCAA TTTACCCATA
TCAGATTCAA AGACCCGAGA CTTATATCGC AAACATGTAG CGGATGAACA AGATGTAGAT
GTGTGGGAGC TTCGTCACTC TCTTGAAAGC ATGGTGATTG AACTGTCTCA ATCTGTGCAA
GATACCCGCA GTGAAACACG TAACTTTAAA AGTACCATGG ATACCTGCAT GGACGACTTA
GCGAAAGTAG AGCGAGAAGG CTTGAGTATG GAAGAGGTCA TGGACTTAGT CCGGACCTTG
GTCAGTCAAA CCAAACAAAT TCGTGGAAGT ACTTTATCTT TTAGCACCGC ACTTAATGAT
GCAGAAAGAG AAATTACGCG ATTAAGAAAT CAACTTGAAC AAAGCCAACA AGCAGCCTTA
TATGACGTTT TGACTGGCCT GTGTAATCGT AGATACTTTG ACGAAGAGTT AGCAGCACAT
GCTATGCGAC CAAACATGTG CCTAATATTG GCTGACTTAG ATCATTTTAA AAAGATCAAT
GACACCCATG GGCATGTCAT GGGGGATTTG GTTTTAAAAG CCAGCGCTAA AAAACTCCAA
GCTGCATGCA GAGAAGGGGC GCAAGCATTT CGCTTTGGTG GTGAAGAGTT CGCCATTATT
GTTCCCAATA GTAAGCTCAG CGTTGCCAGA CAAATAGCCG AAACCATGCG CAGATCTATC
GAAAAAATTG GGGTTAGAGA TAAACGTACA TCCCAAGTAC TCGGAGGAAT AAGTGCTTCA
TTTGGTATTG CCGAAATGAA AACCGGGATG AATCCCTTGG CGCTTATTGA GGCTGCGGAT
AAACAGCTAT ATGAAGCAAA GAACTTAGGT CGAAATCGTG TAATGCCCAT GTCTAACGGT
TAA
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| Protein sequence | MKNHDLENSF KHLKNTIPLL LKHKIPAVPL NYALWYTYAS NESESLNETL DHALQRNLPI
SDSKTRDLYR KHVADEQDVD VWELRHSLES MVIELSQSVQ DTRSETRNFK STMDTCMDDL
AKVEREGLSM EEVMDLVRTL VSQTKQIRGS TLSFSTALND AEREITRLRN QLEQSQQAAL
YDVLTGLCNR RYFDEELAAH AMRPNMCLIL ADLDHFKKIN DTHGHVMGDL VLKASAKKLQ
AACREGAQAF RFGGEEFAII VPNSKLSVAR QIAETMRRSI EKIGVRDKRT SQVLGGISAS
FGIAEMKTGM NPLALIEAAD KQLYEAKNLG RNRVMPMSNG
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