Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0458 |
Symbol | |
ID | 4173231 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 532348 |
End bp | 533373 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053461 |
Product | ApbE-like lipoprotein |
Protein accession | YP_660042 |
Protein GI | 109896787 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAAAGG GTGACAGCGG GAAGGCTAAA TTCCTCGGTT TAATCTTGTG GATATGGCTG CTATGCAGTT GCAGTCAAGC GCCAACAGAA ACACATTTAG CGGGCCATAC CATGGGCACG ACTTACAATG TGAAGTTCGT TAATAGAAAT AATGTAAATG AACAAAAATT ACATGACGAC ATCGATGCTG CATTGGTGAA AGTAAATGAA TTGATGTCGA CTTACGACGC CAATTCAGAA CTGTCACGAT TCAACCAGTG GAAGAGTGAA GCACCCTTTG CGTTATCTTC AGAAACGTTG AAGGTGATGC AGGAAGCGAA GCGCTTGGGC GAGTTAAGTC ATGGCGTACT TGATGTGACT GTAGGGCCAT TGGTTAACCT TTGGGGCTTT GGTCCTGATG CGAAACCTGA GAAACGCCCC AGTAAACAAA CTGTGGCAGA AGTCAAAGCT CGCATCGGAT TAGATAAATT GACCTTACTT GATAACGGCG CGCAAAAGTC TGAAATTGAT TTGTATGTTG ACCTGTCTAC TATTGCCAAG GGCTATGGTG TCGATGTCGT GGCCGAGTTA TTGGATGAAA AGGGTCTGCA TGATTACCTA GTAGAGGTTG GCGGCGAAAT GCGTGTCTCA GGGCATAAAG CAACTGGCAG AGAATGGCGT ATAGCTGTTG AAAAACCTGT CTCGGTTGAG CGTGCGGTGC AAGAAATTAT TTCGATAGGA ACAAACGCAA TTGCAACCTC AGGAGATTAT CGCAACTACT TTGAAGAAGA TGGTGTGCGA TATTCCCACT TAATAGACCC ACGTACAGGC GCACCTATCA CGCACAATCT AGTCGCGGTG ACTGTGGTGC ATTCGTCCTC AATGACGGCA GACGGGTTAG CGACAGCGCT GATCGTAATG GGTAAGGAAG AAGCCTTTAA CGTGGCGTTA CAGAATGATT TAGCGGTATT AATGATCACA CGAGAAAACG GCGAGTTTAA AGAGTATACT ACGCCAAAAT TTGAACCCTT CATTAATCGC CAATAG
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Protein sequence | MIKGDSGKAK FLGLILWIWL LCSCSQAPTE THLAGHTMGT TYNVKFVNRN NVNEQKLHDD IDAALVKVNE LMSTYDANSE LSRFNQWKSE APFALSSETL KVMQEAKRLG ELSHGVLDVT VGPLVNLWGF GPDAKPEKRP SKQTVAEVKA RIGLDKLTLL DNGAQKSEID LYVDLSTIAK GYGVDVVAEL LDEKGLHDYL VEVGGEMRVS GHKATGREWR IAVEKPVSVE RAVQEIISIG TNAIATSGDY RNYFEEDGVR YSHLIDPRTG APITHNLVAV TVVHSSSMTA DGLATALIVM GKEEAFNVAL QNDLAVLMIT RENGEFKEYT TPKFEPFINR Q
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