| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0443 |
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| Symbol | |
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| ID | 4173734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 519409 |
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| End bp | 520545 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053446 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_660027 |
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| Protein GI | 109896772 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATAG TACCCAAGCC CTCCGCGCAT CTAGCTGTAG CCTACCAGCA AGCATCCATT
AAAAGTAACT TAACCCTCGT TTGGTATTTT TCTATCGTCG CTTTAATCGG CTTTGGTGTG
CATCTGTTGC ATCATCTTCG TTTGGGGACT GGGGCGTATA GCCCTGACAT GATGCCTTAT
TTAGCGGTTT ATTTATGCAA TGTATTGTAC GCCCTAGTGA ATTTACTTTT GCTTCCATCT
GCACGAGCTA ATAACAACAT TTCTTGGCGG ACCGGGCTGT TAGAGCTCAT GTACCCTGCG
TTTCTCGCTT TTGTCGCTAC GGTGCTCTCG ATATACACCA GCGTGCAAGG CCATGGACCT
GTCCCCTTCA TTATGGGAAT GATGGTCATC GCGATGTTGG TTCAAGGGCA TTTGATATTT
CTTTATGCTT TGTTGTTTGC GTGTTGGCTT GTTGTTAGCG CAGGTATGCT AAAAATGCTA
CCTTTGGAGG AAGCTTCGTC ACCGATTCTG ACTTGCTTTA CAACCATGTT GATTGCCTTT
TTTATTGCGC GTCTGGCTGA GCGCACTCGC GTCGATCAAT TTGAAATGCT GCAGGAATTG
CATGAAAAAA ACAGCTTATT GGGGGAGTTG GCAGTACAAG ATCCCCTGAC CAAGTTAAAT
AATAGGCGCT ATTTTAGCAA TAAATTGGAA GTGGAAACCG CGCGTAGTTT GCGTTATCAA
CATCCATTGA GCCTATTAGT TGTCGATGTG GATGATTTCA AAAAAATTAA CGACAATGAC
GGGCATTTGG TTGGGGACGA AGTGTTAATC GAAATTTCGC AGCTTATTGC TCAGCAGTTA
CGGGCAGGGG ATGTGGTGTG TCGTTACGGT GGTGACGAAT TCGTTATCTT GTTAGTAGAA
GCATGCGCGG AGCAGTCTCG GGAAATCGCA GATCGTATTT GCCAATCAGT TGATAGAACA
AAATTTGGTC GCGCTAGCCA CAAAGTCACC GTGAGCATTG GTTATGCGCA ATATGTAGGG
CAGCCTTTGG GGGATTTTAT GCAACAAGCG GATAAGATGA TGTACACCTC TAAGAAGCGA
GGTAAAAATC AGGTGGCTTT TTTTGGGTTT GGTATAGGAT CTGAATCCAC GGAATAG
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| Protein sequence | MQIVPKPSAH LAVAYQQASI KSNLTLVWYF SIVALIGFGV HLLHHLRLGT GAYSPDMMPY
LAVYLCNVLY ALVNLLLLPS ARANNNISWR TGLLELMYPA FLAFVATVLS IYTSVQGHGP
VPFIMGMMVI AMLVQGHLIF LYALLFACWL VVSAGMLKML PLEEASSPIL TCFTTMLIAF
FIARLAERTR VDQFEMLQEL HEKNSLLGEL AVQDPLTKLN NRRYFSNKLE VETARSLRYQ
HPLSLLVVDV DDFKKINDND GHLVGDEVLI EISQLIAQQL RAGDVVCRYG GDEFVILLVE
ACAEQSREIA DRICQSVDRT KFGRASHKVT VSIGYAQYVG QPLGDFMQQA DKMMYTSKKR
GKNQVAFFGF GIGSESTE
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