| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0419 |
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| Symbol | |
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| ID | 4173808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 494407 |
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| End bp | 497160 |
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| Gene Length | 2754 bp |
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| Protein Length | 917 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053422 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_660003 |
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| Protein GI | 109896748 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAATA AAATGAGAAA AACGATAATC GCACTATCAC TAGGGATGTT GATCAGTTGT
GGGCAGCAAA CTAGTGAAGA ACATATCCAA GCCGCGCAAG AATTTATCGC GCAAAATGAC
AGTGCTTCGG CGATTATCTC GTTGAAAACC GCCGTACAAT TAGCCCCTAA ATCGCCAGAA
GCGCGCTTTG AATTGGGTAA AGTTTACCTT GACGAAAAGC AATTTGAGAG TGCTGAAAAA
GAACTCAGTC GCGCATTAGA ATATGGTTAC GATGGGGCTA AGGTGCTGCC GTTGCTGACC
CGCGCCTACC AACGAACCGG CGCCTATGCG GCTATCAGTG AAATGGAAGA TAACAACGTC
GACCTGAGTA ATGAGGACAA AGCGGAAATT GGTTATTTCA AAATCGTATC TTTAGTGCGA
TTAAATAAGC CCGATGATGC GCGCGCGATC ATCGCTGATC AGTCGCAGTT ACAGACAGAT
TCCGTATTCA AGTCACTGAG CCAAGCTTAT AAAGACATAC TTGATAAAGA TTATCCTCTG
GCGCTGCAAA GCCTTAGCAA TATCAAAGAT AGCCACCCTG ATCATCCTGA AGTCCTTAAA
CTTTTGGCGC AACTGCATTT AAGCTTGGGC GACCCGAAAG CGGCGGCTCA AGCGTTTGAC
CGATATGTGT CTTTGTATCC CGATGATTTA CAGACCACCT TTGTGCTTGC CAAACTGTGG
GTAGATTTAG GGGAAACGGC AAAAGCGGAA CCCTACCTCG ATCAGTTATT GGCCGTGAAT
GCTAAGAATG GTTTGCTCAA TCAACTTAAA GCGGCTGCAC GAATAGCGGA TAAAGACTAT
GGAGAGGCCC AGAAATACGC TGAGCTAGGT ATTCAAAATG GTATGAATGA TCCTTCGCTA
CGTTTAATAG CAGGTTATGC CGCATACCAG CAAAAAGATT TTGAGGCCGC TCAGCAGCAC
CTTTCATTAG TGGCTAGCAG TTTGCCTAGC AACCATCCTG GTTTGCGTTT ACTGGCTGCT
AGCCAATTAC AGCTGGGCTT GAATGCTGAG GCGGGGGATG TGCTGGAGCG CATGGAGCAA
ATCAACGAGC AAGATGCGCA ACTGTTTTCA AAAGCCAGTT ATGAATTATT GCGTCAGGGA
AATGTAAAAG ACGCCCAAGA GCTAGTAGAG AAATCTTCCA GTATCAGTAC CACGGCAGAA
GACCTCACAC GTTTAGGTTT GCTTAAACTC TCGCTGAATA ATCTTGATGG TATCGTTAAT
CTAGAAGAGG CACTGGAAAA GTCACCTGAA CTTGAGAGTG CTAAAAAAAC ACTCGCTACT
GCCTACATCA CCACTAAGCA ATATGACAAA GCCCTAGAAT TGGCGCAGCA ATGGAAAGCT
GAAGATGCCA ATGACATCAG CGCGTATTTG CTGGCTGGCG AAGTGTTCAG TAAACAGCAA
GATCTAAGCA ATGCGAAAGC CGAGTTTGAG CAGGTGATGC GCATTGACCC TGAACACAAA
GGCGCAGCGC TGGGCTTGGT CAACATCGCT ATTACCGAAA AAGATGTGGT TCGAGCGCAA
TCAGGCTTAA CGGCTTTGCT TAATCGTTTT CCTGATTATA CGCCAGCATT GGCGACGGCT
TATCTGTTTA ATAAACAGCA AGGTAAAACA CAGCAAGGTA TTGAGGTTAT TGAGAGCGCG
CTGAACAAGG CGCCTGACAA TCAAGAGCTG AGTATGTTGT ATGCCCGTGT ATTGCTGCTT
GAAAAGCAAT ATGACCAGGC ACTGCAACAG TTCGTTAAAT TTGATCAAAA TGAATCTTTG
CCACCTGCTT ATTGGCAGGG GAAAGGCCAA GCGCTGATTC GTTCAGGTGA TTTGCAGGGC
GCACAGGATC ATTATGACAA GTGGTTGAGC ATTGCCCCGA ACGACAAACA AGCCGTCGTG
GGCAAGTTAC TCCTGCTGGA CAACACGGGC AAATTTGCCG AAGGCGTCAA GTTAAGCGAA
GGTTTCTTAG CGGTGCGCAA CGACACTCAA ATGCAATTGC TTAACACGCA TTTCTTATTG
ATGAATAAAG ATATGGACGC AGGAAGGAAG GCCTACGAGG CAATACCGCA AGAGCTAAAA
AGTATGCCCA TTGTAAAGGG CTTTCGAGCA CGTTTACTGA TTGTTGATGG TGATTTTGAG
CAAGCCGAGC CAAATGCTCA TGCTGCCTAT GAAGGTTTAC CAAATGGCAG AAATCTAGTC
TTGTGGGTGT TTACCCTTGA GCGATTAAAT AAAAAAGAGC AAGCACTGAG TGCGATTAAA
GCCCATTTAA ACGTATCACC GAACGACGGT GCTGCTTTAA TGATGTTGGC CGAAAGGCAA
ATTAATAGTG GTGATGACGA AGCTGTTGCT AGCTATCAAA CCTTATTACA GAAAAACCCT
AACAACTTTG TTGCACTGAA TAATTTAGCC TATTTGTATC TACAGCAAAA TCAGCTAGAC
AAAGCCCTGG AATACGCTGA AAGCGCGGTA AAACAGCGCC CTGATAATGC TGCCGCAGTA
GATACCTATG CCCAAGTGTT GGTGGCTAAG GAAGAATACC GAAAAGCAGT GAAACAATAC
GATGCGGTTG TGAATGACAA AATGCGCAAT GAAGAGATTT ATCTCAATTA CGTGGAAGCA
CTTTTCCTCG AGGGCAGCAC GTTGCTAGGC AAACGCAAGC TGGAACAACG TGAAATGAAA
ACTGAGGAAA ATATTGCTCG CCAAGCTCAA TTGAAAGCCA AATACGCCGA TTAA
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| Protein sequence | MMNKMRKTII ALSLGMLISC GQQTSEEHIQ AAQEFIAQND SASAIISLKT AVQLAPKSPE
ARFELGKVYL DEKQFESAEK ELSRALEYGY DGAKVLPLLT RAYQRTGAYA AISEMEDNNV
DLSNEDKAEI GYFKIVSLVR LNKPDDARAI IADQSQLQTD SVFKSLSQAY KDILDKDYPL
ALQSLSNIKD SHPDHPEVLK LLAQLHLSLG DPKAAAQAFD RYVSLYPDDL QTTFVLAKLW
VDLGETAKAE PYLDQLLAVN AKNGLLNQLK AAARIADKDY GEAQKYAELG IQNGMNDPSL
RLIAGYAAYQ QKDFEAAQQH LSLVASSLPS NHPGLRLLAA SQLQLGLNAE AGDVLERMEQ
INEQDAQLFS KASYELLRQG NVKDAQELVE KSSSISTTAE DLTRLGLLKL SLNNLDGIVN
LEEALEKSPE LESAKKTLAT AYITTKQYDK ALELAQQWKA EDANDISAYL LAGEVFSKQQ
DLSNAKAEFE QVMRIDPEHK GAALGLVNIA ITEKDVVRAQ SGLTALLNRF PDYTPALATA
YLFNKQQGKT QQGIEVIESA LNKAPDNQEL SMLYARVLLL EKQYDQALQQ FVKFDQNESL
PPAYWQGKGQ ALIRSGDLQG AQDHYDKWLS IAPNDKQAVV GKLLLLDNTG KFAEGVKLSE
GFLAVRNDTQ MQLLNTHFLL MNKDMDAGRK AYEAIPQELK SMPIVKGFRA RLLIVDGDFE
QAEPNAHAAY EGLPNGRNLV LWVFTLERLN KKEQALSAIK AHLNVSPNDG AALMMLAERQ
INSGDDEAVA SYQTLLQKNP NNFVALNNLA YLYLQQNQLD KALEYAESAV KQRPDNAAAV
DTYAQVLVAK EEYRKAVKQY DAVVNDKMRN EEIYLNYVEA LFLEGSTLLG KRKLEQREMK
TEENIARQAQ LKAKYAD
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