| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0418 |
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| Symbol | |
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| ID | 4173807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 492124 |
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| End bp | 493863 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053421 |
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| Product | DEAD/DEAH box helicase-like |
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| Protein accession | YP_660002 |
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| Protein GI | 109896747 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGACA CTGTCGAATT GACTTTTAAA GACCTCAACC TACCTGCCGA ATTGCTTCAA
GCTTTAGAAA AAGTAGGTTA CGAAAAACCA ACCCCAATCC AAGCTCAATG TATTCCGCTA
ATCATGGAAG GTCACGATCT TCTTGGTACT GCGCAAACCG GTACGGGTAA AACAGCAGCA
TTCGCATTGC CAATGCTTGC AAACGTGGAT GCTAACAACA GCAACACTCA ATTATTAGTT
TTGGCACCGA CTCGCGAATT AGCGATTCAG GTAGCTGAAG CCTTTCAGGT ATACGCTAGT
TTCTCTCGTA AACTTAACGT ATTACCTATT TACGGTGGCT CATCTTACGA CAACCAAATT
CGCCAACTAA GACGTGGTGC ACAGGTTGTA GTCGGCACGC CTGGTCGTGT AATCGACCAC
ATCAAAAAAG GCACGTTGAA ATTAGATAAC CTTAAGTTCT TGGTATTAGA CGAAGCCGAC
GAAATGCTAC GCATGGGTTT CATCGATGAC GTTGAGTGGA TTTTGAGCCA CGCACCAGCA
GAGCGCCAAA CTGCGTTGTT CTCAGCGACT ATGCCTGATC CAATCCGCAA AATTACTAAG
CGTTACTTGA GCGATCCTAA ACAAGTTAAA ATCGAATCTA AAGTTGCTAC CGCTAGCACC
ATCAAACAGC GTTACTGCCA GGTGGCTGGC CATCACAAAC TTGAAGCCCT TACCCGTATT
ATGGAAGTGG AAGAGTTTGA TGCAGTGATT ATTTTCGTAC GTACTAAAAC CGCAACCATG
GAGCTTTCTG AGAAATTGTC TGCTCGTGGC TACGCTGTTG AGCCTCTTAA CGGTGACATT
CCGCAAAACT CACGTGAACG TACTGTTGAA CGTTTGAAGC GCGGTAAAAT TGATATTCTT
GTAGCAACAG ACGTTGTTGC ACGTGGCCTT GACGTTGAAC GTGTAAGTCA CGTTATCAAC
TACGACGTGC CTTACGATAC AGAATCTTAC GTTCACCGTA TTGGTCGTAC TGGCCGTGCT
GGTCGTCAAG GTGATGCAAT ACTGTTCATC TCACATCGTG AGAAGCGCAT GTTGTTCTCA
ATCGAGCGTG CTACACGTCA ATCGATTGAT CCTATGCCAA TCCCATCAAT CTCTCAGCTA
AATGAAACGC GTTTGAGCCG CTTCAAAAGC AGCGTGATTG AAGCGATCGG TGACAGCAGC
ATTGAGACAT TGATCCCTAT CGTTGAGTCA ATTCAAGCAG AAACCGAAGC CGCACCAGAA
GTGATTATGG CTGCATTAGC TAAGATTGCT CAAGGTGACG AGCCGCTTAT TCTGAAAGAA
GGCGACCGTC CTGACCTGAA CTCTGCCCCT CCTCGTGGTG ACAGAAATGA CCGTGGTGGT
CGTGATGATC GCGGTGGACG TGGTCGTGAG CGTGGCGGTG ACCGCGGTGG TGACAGACCA
CAACGTGCTC GCAAAAGCAG TACGCCAGAA GAAGGCATGC AGCGCTACCG TATCGAAGTA
GGTCATACTC ATGGCGCTAA GCCTGGCAAC ATCGTTGGCG CGATCGCTAA TGAAGCAAAC
ATCAGCAGTA AAAATATTGG TGCTATCGAG ATTTACGATA ACTTCAGTAC CGTTGATTTG
CCGAAAAATA TGCCTCGTGC AACGCAAGAT ACATTGCAAA AAACCCGTGT TGCCGGTCAG
CGTTTGAACA TGCGTGAATG GTCAGATCAG CCTCCACGTC GTCGTGGTAA GCCTGAATAA
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| Protein sequence | MTDTVELTFK DLNLPAELLQ ALEKVGYEKP TPIQAQCIPL IMEGHDLLGT AQTGTGKTAA
FALPMLANVD ANNSNTQLLV LAPTRELAIQ VAEAFQVYAS FSRKLNVLPI YGGSSYDNQI
RQLRRGAQVV VGTPGRVIDH IKKGTLKLDN LKFLVLDEAD EMLRMGFIDD VEWILSHAPA
ERQTALFSAT MPDPIRKITK RYLSDPKQVK IESKVATAST IKQRYCQVAG HHKLEALTRI
MEVEEFDAVI IFVRTKTATM ELSEKLSARG YAVEPLNGDI PQNSRERTVE RLKRGKIDIL
VATDVVARGL DVERVSHVIN YDVPYDTESY VHRIGRTGRA GRQGDAILFI SHREKRMLFS
IERATRQSID PMPIPSISQL NETRLSRFKS SVIEAIGDSS IETLIPIVES IQAETEAAPE
VIMAALAKIA QGDEPLILKE GDRPDLNSAP PRGDRNDRGG RDDRGGRGRE RGGDRGGDRP
QRARKSSTPE EGMQRYRIEV GHTHGAKPGN IVGAIANEAN ISSKNIGAIE IYDNFSTVDL
PKNMPRATQD TLQKTRVAGQ RLNMREWSDQ PPRRRGKPE
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