Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0417 |
Symbol | |
ID | 4173806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 490492 |
End bp | 491880 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638053420 |
Product | uroporphyrin-III C-methyltransferase |
Protein accession | YP_660001 |
Protein GI | 109896746 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0007] Uroporphyrinogen-III methylase [COG1648] Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) |
TIGRFAM ID | [TIGR01469] uroporphyrin-III C-methyltransferase [TIGR01470] siroheme synthase, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATATT TCCCTATTTT TGTTGATACT AAAGAGCTGA ACTGTCTCGT TGTCGGTGCA GGGGAAGTGG CTGCCCGTAA AGTGGAGTTG CTGTTAAAAA CCTCAGCCAC TATCACAGTG GTTGCCCCTT GGGCCTGTGA TACGGTGCAA CGCTTAGCGG ATGAAGGGCA AGTCACACTG CACACTCGTG GGTACGAATC GAGTGACCTC ACGGCCAAAC AATTAGTCTT TGTCGCCACA GACGACAGCC AATTAAATAT AGATATCCAT CACCAAGCTA AGGCACAAAA TATTCTGGTG AATGTGGTTG ATAATACGCC TTTGTGTCAG TTTATTACCC CTTCAATTGT TGACCGCTCG CCGATTATTA TCGCCATGAG CAGCGGCGGT GTTGCGCCTG TTCTACTGCG CTATTTACGC CAGAAACTCG AGTCTGTTAT TCCGCAAAAG GTCAGTTTGC TGGGGCAGTT TTCAGAAAAA TTCCGTGAAA CCGTTAAAGC CCGCTTTAAC TCAGTGACAA AACGCCGTTA CTTTTGGGAA GATATCCTCG ATGGCGATGT CGCCGAACAG GTTCTACAAG GCAACAACAG CAAAGCCGAA CAGATGATGC AAGACAAACT TGCCCTTGAC GAGCATGACT CGGGTAAAGG AGAGGTGTAC TTGGTCGGTG CTGGTCCAGG CGATCCAGAC TTACTAACAT TTCGCGCGCT ACGCCTAATG CAAAAGGCCG ACGTCGTCGT GTATGACCGC TTGGTATCCA AAGAAATATT AGAACTGGTG CGCCGGGATG CAGAGAAAAT ATACGTGGGA AAAGCCCGCA GCTTGCATAC CGTGCCACAA GATGAAATTA ACGCGCTACT GGCCGATTTA GCCTTAAAGG GGAATCGAGT CGTGCGTTTA AAAGGCGGCG ACCCTTTTAT ATTTGGTCGC GGCGGTGAAG AAATAGAGAC CCTAGTGGAA AAAGGCGTGA GCTTCCAAGT GGTGCCTGGC ATTACAGCCG CCAGTGGTGC TGCCAGTTAC GCTGGCATTC CCCTGACCCA CAGAGATCAC GCCAAGTCGG TGGTATTTGC TACTGGTCAC TTACGAGATA ACAGCATCAA CTTAAACTGG CCCATGCTGG CCCAGCCTGA ACAAACCACT GTATTCTATA TGGGGTTAAC AGGCTTGCCT GTTATTTGTG AGAAACTCAT TCAGCATGGC CTACCGGACA CCACTGAAAT TGCACTGGTG CAATCGGCAA CGACCACAGA GCAAAAAGTC GTGGCCGGTA ACTTAGCAAA TATTCAACAA AAAGTGGCAG AAGCCGGCAT TAAACCACCG GCGCTTATCA TTGTTGGTTC GGTGGTCAGC TTACGAGAGA AACTTAACTG GTTTGGCGCT GACGCTTAA
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Protein sequence | MQYFPIFVDT KELNCLVVGA GEVAARKVEL LLKTSATITV VAPWACDTVQ RLADEGQVTL HTRGYESSDL TAKQLVFVAT DDSQLNIDIH HQAKAQNILV NVVDNTPLCQ FITPSIVDRS PIIIAMSSGG VAPVLLRYLR QKLESVIPQK VSLLGQFSEK FRETVKARFN SVTKRRYFWE DILDGDVAEQ VLQGNNSKAE QMMQDKLALD EHDSGKGEVY LVGAGPGDPD LLTFRALRLM QKADVVVYDR LVSKEILELV RRDAEKIYVG KARSLHTVPQ DEINALLADL ALKGNRVVRL KGGDPFIFGR GGEEIETLVE KGVSFQVVPG ITAASGAASY AGIPLTHRDH AKSVVFATGH LRDNSINLNW PMLAQPEQTT VFYMGLTGLP VICEKLIQHG LPDTTEIALV QSATTTEQKV VAGNLANIQQ KVAEAGIKPP ALIIVGSVVS LREKLNWFGA DA
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