Gene Patl_0417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0417 
Symbol 
ID4173806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp490492 
End bp491880 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content49% 
IMG OID638053420 
Producturoporphyrin-III C-methyltransferase 
Protein accessionYP_660001 
Protein GI109896746 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0007] Uroporphyrinogen-III methylase
[COG1648] Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) 
TIGRFAM ID[TIGR01469] uroporphyrin-III C-methyltransferase
[TIGR01470] siroheme synthase, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAATATT TCCCTATTTT TGTTGATACT AAAGAGCTGA ACTGTCTCGT TGTCGGTGCA 
GGGGAAGTGG CTGCCCGTAA AGTGGAGTTG CTGTTAAAAA CCTCAGCCAC TATCACAGTG
GTTGCCCCTT GGGCCTGTGA TACGGTGCAA CGCTTAGCGG ATGAAGGGCA AGTCACACTG
CACACTCGTG GGTACGAATC GAGTGACCTC ACGGCCAAAC AATTAGTCTT TGTCGCCACA
GACGACAGCC AATTAAATAT AGATATCCAT CACCAAGCTA AGGCACAAAA TATTCTGGTG
AATGTGGTTG ATAATACGCC TTTGTGTCAG TTTATTACCC CTTCAATTGT TGACCGCTCG
CCGATTATTA TCGCCATGAG CAGCGGCGGT GTTGCGCCTG TTCTACTGCG CTATTTACGC
CAGAAACTCG AGTCTGTTAT TCCGCAAAAG GTCAGTTTGC TGGGGCAGTT TTCAGAAAAA
TTCCGTGAAA CCGTTAAAGC CCGCTTTAAC TCAGTGACAA AACGCCGTTA CTTTTGGGAA
GATATCCTCG ATGGCGATGT CGCCGAACAG GTTCTACAAG GCAACAACAG CAAAGCCGAA
CAGATGATGC AAGACAAACT TGCCCTTGAC GAGCATGACT CGGGTAAAGG AGAGGTGTAC
TTGGTCGGTG CTGGTCCAGG CGATCCAGAC TTACTAACAT TTCGCGCGCT ACGCCTAATG
CAAAAGGCCG ACGTCGTCGT GTATGACCGC TTGGTATCCA AAGAAATATT AGAACTGGTG
CGCCGGGATG CAGAGAAAAT ATACGTGGGA AAAGCCCGCA GCTTGCATAC CGTGCCACAA
GATGAAATTA ACGCGCTACT GGCCGATTTA GCCTTAAAGG GGAATCGAGT CGTGCGTTTA
AAAGGCGGCG ACCCTTTTAT ATTTGGTCGC GGCGGTGAAG AAATAGAGAC CCTAGTGGAA
AAAGGCGTGA GCTTCCAAGT GGTGCCTGGC ATTACAGCCG CCAGTGGTGC TGCCAGTTAC
GCTGGCATTC CCCTGACCCA CAGAGATCAC GCCAAGTCGG TGGTATTTGC TACTGGTCAC
TTACGAGATA ACAGCATCAA CTTAAACTGG CCCATGCTGG CCCAGCCTGA ACAAACCACT
GTATTCTATA TGGGGTTAAC AGGCTTGCCT GTTATTTGTG AGAAACTCAT TCAGCATGGC
CTACCGGACA CCACTGAAAT TGCACTGGTG CAATCGGCAA CGACCACAGA GCAAAAAGTC
GTGGCCGGTA ACTTAGCAAA TATTCAACAA AAAGTGGCAG AAGCCGGCAT TAAACCACCG
GCGCTTATCA TTGTTGGTTC GGTGGTCAGC TTACGAGAGA AACTTAACTG GTTTGGCGCT
GACGCTTAA
 
Protein sequence
MQYFPIFVDT KELNCLVVGA GEVAARKVEL LLKTSATITV VAPWACDTVQ RLADEGQVTL 
HTRGYESSDL TAKQLVFVAT DDSQLNIDIH HQAKAQNILV NVVDNTPLCQ FITPSIVDRS
PIIIAMSSGG VAPVLLRYLR QKLESVIPQK VSLLGQFSEK FRETVKARFN SVTKRRYFWE
DILDGDVAEQ VLQGNNSKAE QMMQDKLALD EHDSGKGEVY LVGAGPGDPD LLTFRALRLM
QKADVVVYDR LVSKEILELV RRDAEKIYVG KARSLHTVPQ DEINALLADL ALKGNRVVRL
KGGDPFIFGR GGEEIETLVE KGVSFQVVPG ITAASGAASY AGIPLTHRDH AKSVVFATGH
LRDNSINLNW PMLAQPEQTT VFYMGLTGLP VICEKLIQHG LPDTTEIALV QSATTTEQKV
VAGNLANIQQ KVAEAGIKPP ALIIVGSVVS LREKLNWFGA DA