Gene Patl_0416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0416 
Symbol 
ID4173805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp489774 
End bp490454 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content48% 
IMG OID638053419 
Producthypothetical protein 
Protein accessionYP_660000 
Protein GI109896745 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCCTT GGACGCAAAT CAACAGCGCG CAAATACCGA ATAATGGCGG TGAACTGACG 
TTACATCAGC GCGGTAAAGA ATTTTCAATT CGTATCGCTG GCAAGCGCGG TGAATTGATG 
AATAGCCGTG TTTTTAATTC CGAGAAAGTT CTGTCTCGAG TTGGCTGCGG TCATTTGAAA 
GATGTGGACA ACGCCAATGT GCTGGTGGGC GGTTTAGGCA TGGGGTATAC ATTAACTGCT 
GCCTTGAGTG TGCTGAATAA ATCGGCGAGT GTCACGGTCG CCGAGCTTAT TCCTGATGTT 
GTTACGTGGA ACCAAGGGCC ATTAGGGCAG TGTTCCGGCT ACCCATTGAA AGACCCTAGA 
ACCCAAGTAA AAGTAGGGGA CGTAACCAAG CTGTTAACTC TACAGAGCGA AACGTATGAC 
GCAATTTTGT TGGACGTAGA CAACGGCCCA AGAGGGTTGA CGCATGCTGA TAACAACTGG 
ATATATTCAG AAGTGGGGCT CAAGGCTATT TTGCAGATGC TACGGCCAAA AGGCGTACTG 
GCGATTTGGT CTGCGGGCCC AGATTATTTA TTTGAAGTGC GCCTTAAAAA TGTCGGCTAC 
AAAGTCGATA CGCGCATCGC ATCAGCCAGA GCAGATAAAG GTATCAAGCA CACCATCTTC 
TTAGCTAAAA AGCCTGAATA G
 
Protein sequence
MTPWTQINSA QIPNNGGELT LHQRGKEFSI RIAGKRGELM NSRVFNSEKV LSRVGCGHLK 
DVDNANVLVG GLGMGYTLTA ALSVLNKSAS VTVAELIPDV VTWNQGPLGQ CSGYPLKDPR 
TQVKVGDVTK LLTLQSETYD AILLDVDNGP RGLTHADNNW IYSEVGLKAI LQMLRPKGVL 
AIWSAGPDYL FEVRLKNVGY KVDTRIASAR ADKGIKHTIF LAKKPE