| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0412 |
|---|
| Symbol | |
|---|
| ID | 4173801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 484604 |
|---|
| End bp | 485233 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053415 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_659996 |
|---|
| Protein GI | 109896741 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATTAACC GGACAAGCCC AACCAACCCA CATCCTATCA ATCAAATCAA AGGTTTCATC
TTTGATCTTG ATGGTACATT GGTGACCTCA AAGCTAGATT TCATATACCT GCGCGAACAA
GTCGGTTGCC CACCGAAACA AGACATATTG CGTTTTATCG AAGGATTAGA CGAAGCGCAG
CAAATAGTGG CGAATAGAAT TGTGGCAGAT TACGAACTGC AAGACGCGCA AAATGCCCTG
TGGATAGACG GCGCCCTGCC ATTGATTCAG TGCCTGGCGA GCTCACAGCA ACCTGTCGCT
ATTGTTACGC GCAATAGCCA ACCCGCCACT CAACATAAGC TAAAACACCA TGCTTCGCTG
TTTGATCCCA TAGTAACCAG AGAAGACGCT GCGCCTAAAC CTGATCCGCA AGCGTTATTG
CACATCGCCA CATTGTGGCA ATTACCCGTT CACCAACTCG CCTACGTAGG GGATTATCTG
TATGACATTC AAGCAGCGAA AAACGCAGGT ATGCTTGCTT GTTTATATGC CCCAGATGAA
CTCCCAGAAT ATGCCGACCA GGCCGATTGG GTCTTTAATC ACTTCAGCGA ATTTTTAGCG
GCGTTAAAAA CAAGCAAAGT ACGACGATGA
|
|---|
| Protein sequence | MINRTSPTNP HPINQIKGFI FDLDGTLVTS KLDFIYLREQ VGCPPKQDIL RFIEGLDEAQ
QIVANRIVAD YELQDAQNAL WIDGALPLIQ CLASSQQPVA IVTRNSQPAT QHKLKHHASL
FDPIVTREDA APKPDPQALL HIATLWQLPV HQLAYVGDYL YDIQAAKNAG MLACLYAPDE
LPEYADQADW VFNHFSEFLA ALKTSKVRR
|
|---|
| |