Gene Patl_0402 details

Gene Information

• Locus tag: Patl_0402
• ID: 4173081
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 469824
• End bp: 473198
• Gene Length: 3375 bp
• Protein Length: 1124 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638053405
• Product: transcriptional regulator, CadC
• Protein accession: YP_659986
• Protein GI: 109896731
• COG category: [K] Transcription
• COG ID: [COG3710] DNA-binding winged-HTH domains

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAACGCGA AAAAAATATC CAATATATTC TACATTGGCG ACTGGCAAGT CACGCCTCAG 
ACCAATAGCG TGCGTGCAGG TGATGCCGTT ACCCAGCTCG AACCTAAAGC CATGGATGTG 
TTACTTTTAC TGTGTCAACA ACGCCGAGAC AATGGCCACG AACACGCACT CAGTGCCGAT 
GACATAGCCA GTCAATGCTG GGGCAGTGAA ATTGGCGACA ATCCAGTACA CAAAGCCATT 
ACCCAACTTA GAAAAGCCTT TAACGATAAA CCCAGTACCC CCAAATATAT TGAAACCATC 
CGTAAGCGCG GCTATCGCAT CGTTGCCAAG CTCGACTTCC CGGATGAAGC GTTAACCAAC 
GATCCCCAAG AAAGCACGAA CGACTGGCAA GGGGGCTCGC CTTTTCCGGG CCTTAGCGCC 
TTTGAGCCTG ATGAAAGTAA CGTATTCTTT GGTCGCAGTG CACAAATCAC CGCTTTACTG 
ACTCGGGTAT CAAAGCTAGT CAGTGCGAAA CACGCTTTTT GCTTAGTACT TGGTCCAAGT 
GGCAGCGGCA AGTCTTCGTT AATCAATGCA GGGGTGTTAC CCCGCCTGAC TCATCAAAAC 
GGCCATGACG GCATTGGTGT CGTCAGTTAT ACCAGTGTGG ATCTTGCCGA TGTCAGCCAA 
TCTCGACTCT TCATTGATTT GGCGTCCTCA CTGCTCGATT GGGACATTAA TGATATCCCT 
GTGTTTGAAG GCTTAAGCGC AGAAACACTA GCGGATATGT TGCAAGAAGA CTGCCCGCAA 
GTAGCCGTAC TATGCAATAA GGCGCTAGCC TCTATCCAGC AGCAAACGCC AGCTAGTCGT 
TACGCACAAC CCCAGCTATT TTTATTTATT GACCGCCTAG AAGTCTTACT TTCATCCCCT 
GTATTCAATG ATGATGAACG CAAACGCTTT TTAAAATGCC TTGATACCTT AGCAACATCA 
GGAAGCATTT TAATCTTCAG TGCCTGTCGC AATGACTTTT ACCCGCTCGT CGTGGCGCAT 
CCCAGTTTAA TGGCGGGCAA AGACCAAGGC GCCCATTTCG ATTTACTGCC GCCGTCATCA 
AGTGAGCTCA GTCAAATGAT CCGCTTGCCC GCTAAGGCTG CAAACCTAAG CTGGACAAAC 
GAACCGAACA GCACTAACCC GCTAGATGAA ATCTTATGTC ATGAAGCGGT TAATCACCCT 
GACGCCCTGC CTATGTTGCA GTACACCCTG CAAGAGTTGT ACGAGCAACG TAGCGCTAAC 
AACGAAATGC AGTACTCGGT GTATCGTCAT TTGGGGGGGA TTGAAGGGGC CATAGGTAAA 
AAAGCAGAAC AGATCTACCT TCAACTTTCA AAAGACCAGC AATCGCAATT GGAGTACATA 
CTGTCACTCT TGGTCACCCT GAGCCCAGAC GGTGAAAATA TCACCAGTCG TGCTGCTCGC 
TGGTCGCAAT TAGACGACAA CCCGATTAAA CATTCGAGCC AACATGAACT CGTACAGGCC 
ATGGTGGAAA GTCGCTTACT GGTATCACAC CTGCAACACG GTGAGCCCTG TTTCAGCTTG 
GCCCATGAAG CCCTGTTACG AAAATGGCCA AGGGCCAGCA ACTGGATAAA CGAGCACAGA 
GACGCCCTAA GGATCAAAAG CCAATTACAG CAATTAGCAG GTCGTTGGCA ATTTGAGGAA 
AGAAACAAAG CGTATTTACT CCCAGAAGGA AAGCCCTTAT TAGAAGCGGT TAACTTACAA 
AAAAGTGCCG TTTTTAAGCT TGATGAAGAA GAATGCGCCC TCATCAAAGC ATCGCAAAAA 
AGTGGTAACG TAAAACGCTG GTTAAAACGC ACCACTGTGA CCTTACTTTG TGTGCTCACC 
TTTACCGCCC TGTTTATGAG CGTAAAAAGC CAACAGGCAG AAAATTTAGC CCAGCAAAAA 
CGCTTGGAAG CCGAGAGTCT ATTAGGCTTT ATGGTAGGCG AATTCGCCGA CAAACTGCGC 
AGTGTAAAGC GCATGGATTT ACTTGATGGG ATCAGCAATA AAGCCTTGGA GTATTTTAGC 
CAACAAGATG AAGAAGTCGA GGTGTCTTTT TTCCCGTCTT TAACCGACAC AGCGCAAAAT 
TTTAAAACCC GCTTTCAACA TGCTCAAACC CTAGCTGCAA TGGGTGAAGT GGCTTATTCG 
CGCAATAAAA ATGATGAAGC CAAACAAGCC TTTAGCTCAG CCAAAACGAT TCTAGACAAA 
CTATACAAAA TACAACCCGA GAACAGCGAA CTGTTAAAGG CTCTAGGCGC GAACGCATTT 
TGGTTGGGGC AACTGGCCTC GGACAAGGCA GAATTCACCT TAGCAAAGCC GCATTTCGAG 
GAATATCTGT CTTACAGTAA ATTGATGAAT CAGCTAGAGC CTAACAGTGA TGACGCTAAA 
CTTGAGCTTT CATATGCATA TCTTGCGATG GGTGGTGTTA ATAGTAAGCT ACAAGAGCTA 
GGTGTCGCTA AAATGGCGTT TGAAAAGGCG TTAGCGATTC AGTACGAACT CACTGAAGAT 
TTAGCCAAAA CTGATATGTC TCAAGTCGAT ATTGCAGATA CTTTAGAATG GCTAGCTGAA 
ATAGAAGAGC AGTTAGGCAG CCTAGAACAA GCGGTTCGCA CACGTGAGAG AGTACAGAAT 
ATTATCACCG ACATATTGGC AACCCACGTC GGTAATGCGA ACTTACTTGA GAGTATTGCG 
TACTCTTACC TAAATAATGC CAATGTATTG TATTATCTAG GCCTATATAA AGCAGCAAAA 
CAGGCGGTTT TATCAGCAAA AATCAACTTA GATACACTGT TACTGCAAGA CCCGTCGAAT 
GAAATATGGC AACTTGACTT GCTGGGTGCC CATGCGTTAA ATCTATATTT ATCGTCCCTG 
ACTAGCAGTG CGCCGTCAAA CCAAAGCATT GCATTGAGCG ATTTCAAAAG AATATTAACG 
AGAGCGGAAA GACTCTACTC GTCAATTCCT ATCATCATCG AAGGCTATCA ACTTAACGGT 
AATTGGGATT TAGCCGAGCG AGCAATTAGG TTGGCAACAT CAAAATTTAA ACAGTTATCA 
AGAGAACAGC CTGCAAACCA GTTGCTGTTG ACCGCCTTAA GCAATGTTTA TTTGTTAGCA 
GCAAAACAAG ATGAGCACGC ACAGAACCAG GTAGGTGCTG CATCTATCAC CAATGCCACT 
AGCAATACCC ATTCCGACAA ACGCCAAGCC TGTCAGCAGG CAGCCAACTT GTTGCGCCCC 
ATTGTAACTG ATAACAGCGG CTACGAGGTA CTACTGCCTT TTGTGCAAGC TCACGATTGC 
TTACAACTGC GAGATAAAGT TAAACCGTTC GCTGATAAAT TAGCACTGAT GCAAATAAAA 
AATTATCGTT TTTAG 

 

Protein sequence

MNAKKISNIF YIGDWQVTPQ TNSVRAGDAV TQLEPKAMDV LLLLCQQRRD NGHEHALSAD 
DIASQCWGSE IGDNPVHKAI TQLRKAFNDK PSTPKYIETI RKRGYRIVAK LDFPDEALTN 
DPQESTNDWQ GGSPFPGLSA FEPDESNVFF GRSAQITALL TRVSKLVSAK HAFCLVLGPS 
GSGKSSLINA GVLPRLTHQN GHDGIGVVSY TSVDLADVSQ SRLFIDLASS LLDWDINDIP 
VFEGLSAETL ADMLQEDCPQ VAVLCNKALA SIQQQTPASR YAQPQLFLFI DRLEVLLSSP 
VFNDDERKRF LKCLDTLATS GSILIFSACR NDFYPLVVAH PSLMAGKDQG AHFDLLPPSS 
SELSQMIRLP AKAANLSWTN EPNSTNPLDE ILCHEAVNHP DALPMLQYTL QELYEQRSAN 
NEMQYSVYRH LGGIEGAIGK KAEQIYLQLS KDQQSQLEYI LSLLVTLSPD GENITSRAAR 
WSQLDDNPIK HSSQHELVQA MVESRLLVSH LQHGEPCFSL AHEALLRKWP RASNWINEHR 
DALRIKSQLQ QLAGRWQFEE RNKAYLLPEG KPLLEAVNLQ KSAVFKLDEE ECALIKASQK 
SGNVKRWLKR TTVTLLCVLT FTALFMSVKS QQAENLAQQK RLEAESLLGF MVGEFADKLR 
SVKRMDLLDG ISNKALEYFS QQDEEVEVSF FPSLTDTAQN FKTRFQHAQT LAAMGEVAYS 
RNKNDEAKQA FSSAKTILDK LYKIQPENSE LLKALGANAF WLGQLASDKA EFTLAKPHFE 
EYLSYSKLMN QLEPNSDDAK LELSYAYLAM GGVNSKLQEL GVAKMAFEKA LAIQYELTED 
LAKTDMSQVD IADTLEWLAE IEEQLGSLEQ AVRTRERVQN IITDILATHV GNANLLESIA 
YSYLNNANVL YYLGLYKAAK QAVLSAKINL DTLLLQDPSN EIWQLDLLGA HALNLYLSSL 
TSSAPSNQSI ALSDFKRILT RAERLYSSIP IIIEGYQLNG NWDLAERAIR LATSKFKQLS 
REQPANQLLL TALSNVYLLA AKQDEHAQNQ VGAASITNAT SNTHSDKRQA CQQAANLLRP 
IVTDNSGYEV LLPFVQAHDC LQLRDKVKPF ADKLALMQIK NYRF