Gene Patl_0398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0398 
Symbol 
ID4173072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp456257 
End bp457240 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content43% 
IMG OID638053396 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_659982 
Protein GI109896727 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.137946 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGGATG CAAACCAACC AAAAAACAAA AACGTAAATA GCTCATCATT GTTAGAAGCG 
CTCTCTTTAC CATTACTCAA TGAAAAAATG CATGCCTTTA GCAAAATGGT TAACGTCATT
GCTGAAGCGA TATTTATCGT TAATGGAGAT GGCGTAATCG AGGTAATAAA CCCTTTAGCA
GCCAAGTTTT TCGGCGCCCC CCAAGAAGCA CTAATAGGGC AAAAGTGGTT TCAGTTTTTA
CATGAGCGTT ATCGTGAGCA ATATGAATAT TTGTTTATCA ATTGGAATAA AACCTCAGGC
CTACCGTTAA ATCATGGTCC TAAAGAGGTA CTGATCAACC GACACGATAA TACTTGGTTA
GAGGCAGATT TATCAGTGTC ATGCCTGCCA ACATCCTTAA CGGCTTCAAC TCCTTTGTTC
GTCGGTGTTA TGCATAACCT GACCAAACAT AAAAGTGAAT ACAGCGAGCT AAGACGACTT
GCCTCGACAG ATCACTTAAC TGGGCTCGCA AACCGCCACA ATCTCGAAAA AACATTACAA
AAGAGTTGGC TAGATTGCGT TAATACCGAA CAAGCCATTA GTCTTATTCT TATCGATGTA
GATTATTTCA AATTGTTCAA CGACCAATTT GGACACGTCA ATGGCGATAA GTGTCTGCAG
AAGATAGCCA GAACGATTGA GCAGTGCCTA CCGTCAAATG ACAGTTTAGC GGCGCGCTAT
GGTGGTGAAG AGTTTGCAGT CATTTTGCCG CGCTTACGCT CTGTTAGTGC TGAAATAGTA
GCAAAAGACA TTCAACAGCA AATAAACACT CTAAATTTTA GCGATTTGGG TCTACCGTCC
AGCTTTAGAG TCAGTGTGAG CCAAGGAATT GCCACCGAGC TAGGAGGGCA ATTTCGCACA
TCCGAAGCTC TCATTTGCGC TTCGGATACC GCATTGTATC GAGCAAAATC TGACGGACGT
AATCGCATTA GCATTAGCCC TTAG
 
Protein sequence
MPDANQPKNK NVNSSSLLEA LSLPLLNEKM HAFSKMVNVI AEAIFIVNGD GVIEVINPLA 
AKFFGAPQEA LIGQKWFQFL HERYREQYEY LFINWNKTSG LPLNHGPKEV LINRHDNTWL
EADLSVSCLP TSLTASTPLF VGVMHNLTKH KSEYSELRRL ASTDHLTGLA NRHNLEKTLQ
KSWLDCVNTE QAISLILIDV DYFKLFNDQF GHVNGDKCLQ KIARTIEQCL PSNDSLAARY
GGEEFAVILP RLRSVSAEIV AKDIQQQINT LNFSDLGLPS SFRVSVSQGI ATELGGQFRT
SEALICASDT ALYRAKSDGR NRISISP