Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0398 |
Symbol | |
ID | 4173072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 456257 |
End bp | 457240 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638053396 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_659982 |
Protein GI | 109896727 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.137946 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGGATG CAAACCAACC AAAAAACAAA AACGTAAATA GCTCATCATT GTTAGAAGCG CTCTCTTTAC CATTACTCAA TGAAAAAATG CATGCCTTTA GCAAAATGGT TAACGTCATT GCTGAAGCGA TATTTATCGT TAATGGAGAT GGCGTAATCG AGGTAATAAA CCCTTTAGCA GCCAAGTTTT TCGGCGCCCC CCAAGAAGCA CTAATAGGGC AAAAGTGGTT TCAGTTTTTA CATGAGCGTT ATCGTGAGCA ATATGAATAT TTGTTTATCA ATTGGAATAA AACCTCAGGC CTACCGTTAA ATCATGGTCC TAAAGAGGTA CTGATCAACC GACACGATAA TACTTGGTTA GAGGCAGATT TATCAGTGTC ATGCCTGCCA ACATCCTTAA CGGCTTCAAC TCCTTTGTTC GTCGGTGTTA TGCATAACCT GACCAAACAT AAAAGTGAAT ACAGCGAGCT AAGACGACTT GCCTCGACAG ATCACTTAAC TGGGCTCGCA AACCGCCACA ATCTCGAAAA AACATTACAA AAGAGTTGGC TAGATTGCGT TAATACCGAA CAAGCCATTA GTCTTATTCT TATCGATGTA GATTATTTCA AATTGTTCAA CGACCAATTT GGACACGTCA ATGGCGATAA GTGTCTGCAG AAGATAGCCA GAACGATTGA GCAGTGCCTA CCGTCAAATG ACAGTTTAGC GGCGCGCTAT GGTGGTGAAG AGTTTGCAGT CATTTTGCCG CGCTTACGCT CTGTTAGTGC TGAAATAGTA GCAAAAGACA TTCAACAGCA AATAAACACT CTAAATTTTA GCGATTTGGG TCTACCGTCC AGCTTTAGAG TCAGTGTGAG CCAAGGAATT GCCACCGAGC TAGGAGGGCA ATTTCGCACA TCCGAAGCTC TCATTTGCGC TTCGGATACC GCATTGTATC GAGCAAAATC TGACGGACGT AATCGCATTA GCATTAGCCC TTAG
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Protein sequence | MPDANQPKNK NVNSSSLLEA LSLPLLNEKM HAFSKMVNVI AEAIFIVNGD GVIEVINPLA AKFFGAPQEA LIGQKWFQFL HERYREQYEY LFINWNKTSG LPLNHGPKEV LINRHDNTWL EADLSVSCLP TSLTASTPLF VGVMHNLTKH KSEYSELRRL ASTDHLTGLA NRHNLEKTLQ KSWLDCVNTE QAISLILIDV DYFKLFNDQF GHVNGDKCLQ KIARTIEQCL PSNDSLAARY GGEEFAVILP RLRSVSAEIV AKDIQQQINT LNFSDLGLPS SFRVSVSQGI ATELGGQFRT SEALICASDT ALYRAKSDGR NRISISP
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