Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0342 |
Symbol | hemC |
ID | 4173165 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 400636 |
End bp | 401565 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638053341 |
Product | porphobilinogen deaminase |
Protein accession | YP_659927 |
Protein GI | 109896672 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGATC GCGTTATTCG AATTGCTACG CGCAAAAGTG CTTTAGCCAT GTGGCAAGCA GAATATGTTC AAGCCAAATT ACTTGAAGCT CATCCCCAAC TTAAGGTGGA ATTGGTGCCT ATGTCGACAC AGGGCGACCG GATTTTGGAT ACGCCATTAG CCAAAATTGG CGGCAAAGGC CTGTTTATTA AAGAGCTCGA AGTCGCCATG AGCGAAGGCC GCGCAGATAT AGCGGTGCAT TCAATGAAGG ACGTACCCGT TGATTTCCCA GCAGGCTTTG GCTTGCATTG CATATGCGAA CGGGAAAACC CCTATGACGC ATTTGTATCA AACACCTATG CCAGCATCGA AGAATTGCCG CAAGGCGCAA TAGTCGGTAC TTCAAGTTTG CGCCGTCAGT GCCAGATTCG CAGCGCCCGC CCAGATTTAA CCATTCGTGA CCTGCGCGGT AACGTTAACA CGCGTTTAGC CAAATTAGAT GACGGCCAAT ACGATGCCAT TATTCTGGCC GCTGCTGGCT TGATCCGCCT TGAAATGCAA GATCGCATCA AAACCTATAT CGAACCTACT GTGTCCCTGC CCGCTGTTGG CCAAGGTGCT GTAGGCATTG AATGTCGTAA CGATGACGCT GAGCTAATCG AATTACTCAA GCCGCTAAAT CACAGCGACA CCGAATCACG CGTTAAAGCC GAACGCGCCA TGAACGCCAA ATTAAATGGC GGGTGCCAAG TGCCTATCGG CAGTTATGCC GTCTTAAACG GTGACGAACT GTATCTACGT GGATTAGTCG GCTCACCCGA TGGCAGCGTA CTTTTGCAGG CTGAGAAACG TGGCAATGTG AATGATGCGC TTAGCATCGG CGTTGATGTG GCTGAGCAAT TGCTTGAAAA AGGCGCGGGT GACATTCTTC AGGCACTATA TAAAGATTAA
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Protein sequence | MSDRVIRIAT RKSALAMWQA EYVQAKLLEA HPQLKVELVP MSTQGDRILD TPLAKIGGKG LFIKELEVAM SEGRADIAVH SMKDVPVDFP AGFGLHCICE RENPYDAFVS NTYASIEELP QGAIVGTSSL RRQCQIRSAR PDLTIRDLRG NVNTRLAKLD DGQYDAIILA AAGLIRLEMQ DRIKTYIEPT VSLPAVGQGA VGIECRNDDA ELIELLKPLN HSDTESRVKA ERAMNAKLNG GCQVPIGSYA VLNGDELYLR GLVGSPDGSV LLQAEKRGNV NDALSIGVDV AEQLLEKGAG DILQALYKD
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