| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0342 |
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| Symbol | hemC |
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| ID | 4173165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 400636 |
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| End bp | 401565 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638053341 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_659927 |
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| Protein GI | 109896672 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAGATC GCGTTATTCG AATTGCTACG CGCAAAAGTG CTTTAGCCAT GTGGCAAGCA
GAATATGTTC AAGCCAAATT ACTTGAAGCT CATCCCCAAC TTAAGGTGGA ATTGGTGCCT
ATGTCGACAC AGGGCGACCG GATTTTGGAT ACGCCATTAG CCAAAATTGG CGGCAAAGGC
CTGTTTATTA AAGAGCTCGA AGTCGCCATG AGCGAAGGCC GCGCAGATAT AGCGGTGCAT
TCAATGAAGG ACGTACCCGT TGATTTCCCA GCAGGCTTTG GCTTGCATTG CATATGCGAA
CGGGAAAACC CCTATGACGC ATTTGTATCA AACACCTATG CCAGCATCGA AGAATTGCCG
CAAGGCGCAA TAGTCGGTAC TTCAAGTTTG CGCCGTCAGT GCCAGATTCG CAGCGCCCGC
CCAGATTTAA CCATTCGTGA CCTGCGCGGT AACGTTAACA CGCGTTTAGC CAAATTAGAT
GACGGCCAAT ACGATGCCAT TATTCTGGCC GCTGCTGGCT TGATCCGCCT TGAAATGCAA
GATCGCATCA AAACCTATAT CGAACCTACT GTGTCCCTGC CCGCTGTTGG CCAAGGTGCT
GTAGGCATTG AATGTCGTAA CGATGACGCT GAGCTAATCG AATTACTCAA GCCGCTAAAT
CACAGCGACA CCGAATCACG CGTTAAAGCC GAACGCGCCA TGAACGCCAA ATTAAATGGC
GGGTGCCAAG TGCCTATCGG CAGTTATGCC GTCTTAAACG GTGACGAACT GTATCTACGT
GGATTAGTCG GCTCACCCGA TGGCAGCGTA CTTTTGCAGG CTGAGAAACG TGGCAATGTG
AATGATGCGC TTAGCATCGG CGTTGATGTG GCTGAGCAAT TGCTTGAAAA AGGCGCGGGT
GACATTCTTC AGGCACTATA TAAAGATTAA
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| Protein sequence | MSDRVIRIAT RKSALAMWQA EYVQAKLLEA HPQLKVELVP MSTQGDRILD TPLAKIGGKG
LFIKELEVAM SEGRADIAVH SMKDVPVDFP AGFGLHCICE RENPYDAFVS NTYASIEELP
QGAIVGTSSL RRQCQIRSAR PDLTIRDLRG NVNTRLAKLD DGQYDAIILA AAGLIRLEMQ
DRIKTYIEPT VSLPAVGQGA VGIECRNDDA ELIELLKPLN HSDTESRVKA ERAMNAKLNG
GCQVPIGSYA VLNGDELYLR GLVGSPDGSV LLQAEKRGNV NDALSIGVDV AEQLLEKGAG
DILQALYKD
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