| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0335 |
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| Symbol | |
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| ID | 4173158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 392102 |
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| End bp | 393682 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053334 |
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| Product | SSS family solute/sodium (Na+) symporter |
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| Protein accession | YP_659920 |
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| Protein GI | 109896665 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.495731 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACTC TAGATTTTTT GGTTGTTGCA TTGTATTTGG TGGCTTTGTT AGTCATGGGA
TTTATGTTGC GAGAACAGAC AAATAAAAGT GACTATTTTC TGGGTGGGAA AAGTCTAGGT
TGGAAACCCT TGGCGTTGTC GGTCATGGCC ACTCAGTTAT CAGCAATTAG TTTTATCTCT
GCTCCCGCCT TTGTGGGATT ACGTGAAGGT GGCGGCATGC AGTGGCTGTC GTACGAATTA
GGTGTGCCTT TGGCCATGAT CCTTATTCTG GCGACTATTC TGCCCAAGCT TTACCGCGCT
GGCATTGTCA GTATTTACGA TTATTTAGAA ATGCGCTTTG GTCGCTCCAC TCGTGTGTTG
ATCAGTATCG TGTTTCAGTT TAGCCGGGCC TTTGCGACCG GTATTATGAT TTACGCCGTA
TCGCTTATTC TGCAAGGCAC CATGGGTATC GAAGCATGGC AAGCCATTCT ATTAACCGGT
GTCATTACCG TGCTTTATTC GCTGCAAGGC GGTATGAAAG CGGTGGTCTA CGGCGATGCC
ATTCAAATGG TTATCATCAT CTTAGGCACT GTGGCCTGTA TCGGGTACGG CTTGTATTAC
CTAGGTGGCG TGGATTCATT TGTTGCCAAT GTTGATGCAG ATCGCCTGCA AGCGGTTAAG
TTTGATTCGT TCGGCTTTAG CGGCGACGGT TTTGGCTTCT GGCCAATGAT ATTCGGTGGT
GTGGTACTTT ACGCGTCATA TTATGGCTGT GACCAAACCC AAGCCCAGCG TGCGTTGTCA
GCAAAAGATC CTGACAACCT GCGCTATATG ATTTTAGCCA ATGGCGTTAT TCGTTTTCCT
ATCACAATTT TGTATTGTTT CTCGGGTTTG ATTGTGGGCA CTTTAGCCAT GACTGAGCCT
AGCTTTATGG CTAAGATCCC GACGGATAAT CCGGATTGGA TGATGCCGAT GTTCATTTTA
AATTACTTAC CTCATGGACT TATCGGCTTA TTGGTTGTCG CAATATTGGC TGCCGCTATG
TCATCGCTCA GCTCCGCAAT TAACTCGCTG TCTGCGGTCA CCATAGAAGA TTACTGCCGT
ATAACCAATA AAGAATTGAG CCAAGGCGGC TACTTGAAAT TGGCTAAATA CATGGGCTTA
GTGTGGGGCG CGATTACTTT GGTGCTATCT CTTTATGCTG GCAACATCGC GCCAACGATT
ATTGAGGCGA TTAACAAGGT CGGCTCTTTG TTCTACGGGC CAATTCTTGC CGTGTTCTTG
TTAGCAGTGT TAACCAAAAG CACGTCAGGT TTACACGTTA ACATTGGGCT TATTAGCGGG
GTGCTATTTA ACTTGCTTAT CTCGATGATA GCGCCTGAAA TCTTCTGGTT CTGGTGGAAC
TTTATCGGCT TCGTCGTCAC GATTGTGATG GCAATGATGA TGAGCAAAGT CAAACCTTTT
ACTTACCAGC CAAGCGAAGA AGAAGCCGCA GCTGCGCCCG TGTCTCTGTC AATTTTGACC
ACCAAAGACA TCGTCCTGTT ACTGGGTATG TTCGCTGCTA TGATCGCCTT TTGTTTATAT
ATCCCCACCG CGTTTGTTTA A
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| Protein sequence | MNTLDFLVVA LYLVALLVMG FMLREQTNKS DYFLGGKSLG WKPLALSVMA TQLSAISFIS
APAFVGLREG GGMQWLSYEL GVPLAMILIL ATILPKLYRA GIVSIYDYLE MRFGRSTRVL
ISIVFQFSRA FATGIMIYAV SLILQGTMGI EAWQAILLTG VITVLYSLQG GMKAVVYGDA
IQMVIIILGT VACIGYGLYY LGGVDSFVAN VDADRLQAVK FDSFGFSGDG FGFWPMIFGG
VVLYASYYGC DQTQAQRALS AKDPDNLRYM ILANGVIRFP ITILYCFSGL IVGTLAMTEP
SFMAKIPTDN PDWMMPMFIL NYLPHGLIGL LVVAILAAAM SSLSSAINSL SAVTIEDYCR
ITNKELSQGG YLKLAKYMGL VWGAITLVLS LYAGNIAPTI IEAINKVGSL FYGPILAVFL
LAVLTKSTSG LHVNIGLISG VLFNLLISMI APEIFWFWWN FIGFVVTIVM AMMMSKVKPF
TYQPSEEEAA AAPVSLSILT TKDIVLLLGM FAAMIAFCLY IPTAFV
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