| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0322 |
|---|
| Symbol | |
|---|
| ID | 4173144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 375310 |
|---|
| End bp | 376905 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638053321 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_659908 |
|---|
| Protein GI | 109896653 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAACC ACGCATTGAA TAGAAACCTG ATAGAGCGCG TTGCCTTAGG TGACCTGCTT
CGTAAGCGCA GCAGAGACAG TGGCGAGCAG CACGCTATTG TGGATTTTCC GGAAGGAATG
CGCCGAGCAA CCAGTTATAA CGAGCTAAAC AAACGGGTGA ATCAGTTGGC CCACGGCTTG
ATCGAAAAGG GCGTTAAACA AGGGGATAAA TTAGCGTTAT TCTCCACTAA TCAGCGCGAC
ATGCTCACCG TGTACTTTGC CTGCTACAAA CTTGGTGTCA TTGCTGTACC CATTAACTTT
ATGCAAGGCG TGGACGATGT GCGCTACAAC CTTGAACACA GCGAAACCTC AGCGGTTATT
TACGAAGCGA TGTTTACCGA GCTAGTGCAC GCCAGCACCC AAGGTAATCC ACACATCAAG
CTGACCGTGC AAATGGGCAA TACCAAGGGC AAATCTGATT ACAGCTTAGA AGCGCTGCTT
GATAATCAAA GTGAGCAAGA GATTAATGAT CGTATTATTG AGGACAGAGA TACGGCCCAC
ATGATCTACA CCTCGGGCAC CACATCACGG CCTAAAGCGG TTGAGTCATC CCATCTGGCC
CTGACCATAG CGGCGTTAAC CGGTGTCATT GAGCTTGAGC TAAATCGCTA TAACCGGATG
TTGTTGGTGC TGCCGTTGTT TCATTGTGCG GCCTTGGCTG TGCTACACCC AGTCATGATG
CGCGGGGGCT GTACTGTGCT GCACGCTGCA TTTGACCCTA ACGTTATTGT GGGCAGCCTT
GAGCAGGAAA AAATCGAAAC CGCCGTGTTT ATGCCCATGA TGTGGCATGC ACTGCTCGCC
ACGCCGAATG TTGAACAGCG CGACTTTCAA CATTTCAAAT TAGGGGTGTA TTCCATGGCT
GCTATGAATA GTAAAAGCCT AGAAAAAGTG CGCAAAGTCT TTGGTTGCCA GATGCATTTG
GGCAGCGGGC AAACCGAGTT CGCCCCTGTT GCCTGTATGT ATCGAGATAA AACTCCAACC
GAATTTAGCG AAGGTAATTA TTGGGGCGTG CCGGTGTGCA CTGGTGAGCA AGCGATTATT
GATAAGCAAG GCAACGAGCT GCCAAACGGC GAAGCAGGGG AGATCGTATG GCGCGGGCCA
CAAGTTATGC GTGGCTATTA TAAGAACGAG CAAGCCACGG CAGAGGCGGG CAAATTCGGC
TGGCATCACA CGGGGGATAT CGGCTTAATC GATAACCAAG GCCAACTGCT GTTTATTGAT
CGCATCAAAG ACACAATAAA ATCCGGTGGC GAAAATGTCT CATCACAAAA GGTAGAGCAA
GCCTTGGAAT TACTAGAGGG TATCGAGCGC GCAGCCGCTT TCGGCGTGAG CCACCCCCAT
TGGGGCGAAG CCGTGTGTGC CTGCATTATC AGCACAACCT TCAGTGAAGC TGACCTTGCT
CTTATCGAAG CGCACTGCAA AGCCCAGCTA GGGCAATTCG AAGTCCCCAA AGCCATTTTT
ATCTGCGAAA CCCTACCGGT TACAGGCACA GGGAAAGTCA GAAAGGTGGA GTTGCGAGAG
CAGTATAAGG ATGTGTTTGG TGATGTAAGT GACTAG
|
|---|
| Protein sequence | MNNHALNRNL IERVALGDLL RKRSRDSGEQ HAIVDFPEGM RRATSYNELN KRVNQLAHGL
IEKGVKQGDK LALFSTNQRD MLTVYFACYK LGVIAVPINF MQGVDDVRYN LEHSETSAVI
YEAMFTELVH ASTQGNPHIK LTVQMGNTKG KSDYSLEALL DNQSEQEIND RIIEDRDTAH
MIYTSGTTSR PKAVESSHLA LTIAALTGVI ELELNRYNRM LLVLPLFHCA ALAVLHPVMM
RGGCTVLHAA FDPNVIVGSL EQEKIETAVF MPMMWHALLA TPNVEQRDFQ HFKLGVYSMA
AMNSKSLEKV RKVFGCQMHL GSGQTEFAPV ACMYRDKTPT EFSEGNYWGV PVCTGEQAII
DKQGNELPNG EAGEIVWRGP QVMRGYYKNE QATAEAGKFG WHHTGDIGLI DNQGQLLFID
RIKDTIKSGG ENVSSQKVEQ ALELLEGIER AAAFGVSHPH WGEAVCACII STTFSEADLA
LIEAHCKAQL GQFEVPKAIF ICETLPVTGT GKVRKVELRE QYKDVFGDVS D
|
|---|
| |