| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0295 |
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| Symbol | |
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| ID | 4172928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 344976 |
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| End bp | 347369 |
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| Gene Length | 2394 bp |
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| Protein Length | 797 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053294 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_659881 |
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| Protein GI | 109896626 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.141972 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAGGA TATCTCCTCT AGCAGCCCTA ATAAGCGTGC TATTGCCAGC CAGTGTTTTA
GCGCAAACCA TTGAAGGCAC AGTAGTTAAT AATGATGGCC GAGCGGTTGC TGGAGCAACG
GTAGAAGTAG AAGGTGTCGG CATTGAAACT ATCACCGACC AAGAAGGCCG TTTTACGTTC
ACAGAGTTAA CGCAAGGTAA GAACGAGCTA CATATTTCTT CACCGGGCTT TGCCCATCTA
CATCAAGATA TTTCGGTGCC AGAACAAGGC ACGAGGCAAA TAGAATTTAT TCTGCAGCGC
TCGCCTATCG AAGTAATTGA CGTATACGCC ACACCCATTC ATATGTCGGT GATGGAATCA
GCGTCTCCTG TGAGTGTGTT ATCAGGCGAA ACCTTGCGCC GTCAACAAGC CTCGACATTG
GGTGACAGTT TAGAAAAGCT TCCTGGGGTG CAATCAAACT TTCATGGAGG TGTCGCAAGT
ACCCCTATCA TCCGTGGTCT AAGCGGCCCC CGGGTGCTGA TCTCACAGAA CGGTTTAGAC
GTCAGTGATG TATCAAGAGT TGGGCCGGAC CACTCGGTAG CAAGTGAAGC GTCGACATCT
CAACAAATTG AAGTGCTGCG CGGTCCTGCC ACATTATTTT ACGGTAGTGG TGCTGTTGGT
GGCGTAGTTA ACGTAGTCGA CGGTCGAGTA CCTAGTGACA ACACCACTCG CGGCGAATGG
TTACTCGAAA CCAGCTCGGT TGATGATAAA AAGCTTGGCT CATTTAACGT GACCACTGGC
TATGAGTCAT TTGGGTTTTA CGCCGATGGC TATTGGCGAG AATCAAATGA TTATGACGTT
CCGGTGGCAC CAGATGCTGA CTCAAACGAG CCCCAAGAGC ACGTGGTTAA GAACAGTTCA
GAAAAATCTG ATGGCATCAC CTTAGGTGCT AGCTACCTAA TGGACCAAGG ATACATAGGT
GTGGCCGTTG AGCAATTTAA CCGCGAGTAT GGCATACCCG GGCATTCGCA CGGAGGCGAA
GACGAAAGCG TTTACGCTGA TTTAGAACAA ACCCGCGTAC AGCTTTTAGG TGAGTTAAAC
CTTGATAACG AATGGCTCAG CAAGATTAAC TTACGCGGCG GTTTTACCGA CTATGAACAC
GCGGAAATAG AAGAAGGCGC TGTTGGCACT TTATTCGAAA ACGAAACACA TGAGCTAAAG
CTCGACTTTA TTCATACCCC ATTTGCTGAT TGGAACGGTG GGCTCAGTAT TCATTACAAA
AACAGTGATG TTGCTGCTCA AGGCGAAGAA GCATTTACGC CGCCCTCAGA AGCGCAAACC
ATTGCTTTAG CCATCATGGA AGAAAAACAC TTTGGTGACG TGTTATTGCA ATTTGGTGCC
CGCATTGAGC GTGTCACTAT TGATGCAAAT AACGTGTTGT TGCCAACGCT TGAAGCGCAC
GCCCACGACG ACGAAGCTGA AGAAGATGAG CACGATCATG ACCACGAGCA TGAAGAAGAA
GCCTCTGTCA CACGCGTTTT CGAGCTAGAT CACGAATTTA CTCCAGTGAG CTTATCCGCG
GGCTTAGTGT GGGACTTTAC ACCGGGTTAC AACCTAGGAT TGTCAATTTC ACGCTCTGAA
CGTGCCCCTT CTGCAGCTGA ACTGTTGTCC TTCGGCGCGC ATATTGGTAC GGGTACCTAT
GAAGTGGGCG CACTTTTCGC CTTAAATGAC GAAGGTTCAA GTATCGGCCT CACCTCAAAA
GATATCGATC TTGAAACCGC CAACAATATC GATCTCACAT TACGTAAAAC CCAAGGAGAC
ATTGGGTTCG TATTCAACGC GTTCTACAAC CAAGTGGACA ATTATTACTA CCAAACAGCC
ACGGGTTTGT TTGCCGAAAG CGGCCACGAT CATGAACACG AGCATGAAGA AAGCGGTGTC
GAAGAAGACG AGCATGCAGA CGAATTACCG GTTTATATTT TTCAAACTGA TGACGTCATT
TTACATGGGT TTGAGGCACA AATAGCCTGG CAAGCAACCG ATGAATTCAA AGCAACCTTG
TTCTCAGATT ACGTGCGCGC ACGTTTAAAA GACGGTGGAG ACTTACCCCG TACGCCACCA
CTGCGCTTTG GTACACAATT TAGTTATCAA ACTGCACATT TGAGTGCGCA TTTAGATATC
ACCCGCTACC AAGAACAAGA TCGTGTTTCA TCTGACGAAA CCAGCACCAG TGGCTACACC
TTGATCGATG CGAGTGTGTC TTATTACCTA CCTGTTTTTA GTCACGATAT TGCCGTTTTT
CTTAAAGGCA ATAACCTGAC TGACACTGAG GCCAGAGTTC ACACCTCATT CTTAAAAGAC
ATTGCACCAC GTCCGGGACG CAGCATTTCT GTTGGCATCA GAGGCAACTT CTAG
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| Protein sequence | MNRISPLAAL ISVLLPASVL AQTIEGTVVN NDGRAVAGAT VEVEGVGIET ITDQEGRFTF
TELTQGKNEL HISSPGFAHL HQDISVPEQG TRQIEFILQR SPIEVIDVYA TPIHMSVMES
ASPVSVLSGE TLRRQQASTL GDSLEKLPGV QSNFHGGVAS TPIIRGLSGP RVLISQNGLD
VSDVSRVGPD HSVASEASTS QQIEVLRGPA TLFYGSGAVG GVVNVVDGRV PSDNTTRGEW
LLETSSVDDK KLGSFNVTTG YESFGFYADG YWRESNDYDV PVAPDADSNE PQEHVVKNSS
EKSDGITLGA SYLMDQGYIG VAVEQFNREY GIPGHSHGGE DESVYADLEQ TRVQLLGELN
LDNEWLSKIN LRGGFTDYEH AEIEEGAVGT LFENETHELK LDFIHTPFAD WNGGLSIHYK
NSDVAAQGEE AFTPPSEAQT IALAIMEEKH FGDVLLQFGA RIERVTIDAN NVLLPTLEAH
AHDDEAEEDE HDHDHEHEEE ASVTRVFELD HEFTPVSLSA GLVWDFTPGY NLGLSISRSE
RAPSAAELLS FGAHIGTGTY EVGALFALND EGSSIGLTSK DIDLETANNI DLTLRKTQGD
IGFVFNAFYN QVDNYYYQTA TGLFAESGHD HEHEHEESGV EEDEHADELP VYIFQTDDVI
LHGFEAQIAW QATDEFKATL FSDYVRARLK DGGDLPRTPP LRFGTQFSYQ TAHLSAHLDI
TRYQEQDRVS SDETSTSGYT LIDASVSYYL PVFSHDIAVF LKGNNLTDTE ARVHTSFLKD
IAPRPGRSIS VGIRGNF
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