Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0269 |
Symbol | |
ID | 4171948 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 316735 |
End bp | 317028 |
Gene Length | 294 bp |
Protein Length | 97 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638053268 |
Product | helix-turn-helix, Fis-type |
Protein accession | YP_659855 |
Protein GI | 109896600 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG2901] Factor for inversion stimulation Fis, transcriptional activator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00086435 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGAGC AAAATGTAAC TTCTCCTTTT ACCACTACGG TAACGACTCC TTCACAAACA CAGGCGCAGA AGCCTTTACG TGACTCTGTA AAACAAGCAG TGAATAAGTA CCTTAAGCAA CTAGACAACA CAGATATCGA AAATTTGTAC GAACTAGTAA TGGCCGAAGT TGAAGCGCCA ATGTTAGAAG AAATCATGAC TTTCACCCGC GGAAACCAAA CTCGCGCGTC AATCATGTTA GGCATCAACC GTGGCACGCT ACGCAAGAAG CTTAAACAGT ACGGCATGAA CTAA
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Protein sequence | MFEQNVTSPF TTTVTTPSQT QAQKPLRDSV KQAVNKYLKQ LDNTDIENLY ELVMAEVEAP MLEEIMTFTR GNQTRASIML GINRGTLRKK LKQYGMN
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