| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0265 |
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| Symbol | |
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| ID | 4171944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 311580 |
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| End bp | 312512 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053264 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_659851 |
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| Protein GI | 109896596 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.021653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAATC CAGAGAGTGC AAATGTTCTA AAACAAACGT TGCTGGTGGT AGATAACCCC
GGCGAAATGT TAAAAGCACT CACCCGCCAA TTTTCAACAT CATTCCATTT GCTCGTGTGT
AATGACAATG AAGAGGTACT CAAGTTAGCG CTAAATGCAC CTATCGACTT AGTATTGATC
AGAGTATCTC CCCGTGACAG CGACTGGCTT CTCATTTGTA CTCGTTTGAA ACAGCACCCC
CTAACCATAG ATATTCCGCT TATCTTGTAT GGTAAAGATA CGCCCAAATC CTTGATTTTA
TCTGGACTAG AAGCGGGTGC ATTAGACTTC GTTGAGCTGC CAACCGATAT TGCCATGCTC
AACATCAAGA TCCGAAATCA TATGCAGGTA TCGGCTAAGC TTCGTACGCT GGCGCTTATC
TCCTGTACCG ACGGGCTGAC TGGCGTACCT AACCGCATGC AGCTCGACAC CACCTACAAC
CGGTTTTGGT ACGCAGCTAT TCGAGGGCAA CATGAGCTGT CAGTGCTAAT GATTGATATT
GATTTTTTCA AGGGATTTAA TGATACCTAT GGTCATGTAG CGGGTGACGA ATGTTTAAAG
AAGGTTGCCA CTACCATTGA AGCGAGTTTG CAGCGTGAGA GTGATGCTAT GGGGCGCTAT
GGCGGCGAAG AGTTCCTAGT ACTGTTACCT TTCACCGATA AAGTAGGCGC GCAAAAAATA
GCTGAAATGA TATTACGCAA TATTGAAGCG CTAGATATAA AAAACAAGGC GTCTACTGTT
AATGGTAAGG TCACTGTGAG TGTCGGTGCG GCAACACTGA AGCTCCATGA CATTAACGAC
CACACCTTTA ATCACCCTGA ATTTCTGGTG GAGCAAGCCG ACCGGTGTCT TTATCAAGCT
AAGAAACAGG GCCGCAACCG GCTTGTGAGT TAG
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| Protein sequence | MQNPESANVL KQTLLVVDNP GEMLKALTRQ FSTSFHLLVC NDNEEVLKLA LNAPIDLVLI
RVSPRDSDWL LICTRLKQHP LTIDIPLILY GKDTPKSLIL SGLEAGALDF VELPTDIAML
NIKIRNHMQV SAKLRTLALI SCTDGLTGVP NRMQLDTTYN RFWYAAIRGQ HELSVLMIDI
DFFKGFNDTY GHVAGDECLK KVATTIEASL QRESDAMGRY GGEEFLVLLP FTDKVGAQKI
AEMILRNIEA LDIKNKASTV NGKVTVSVGA ATLKLHDIND HTFNHPEFLV EQADRCLYQA
KKQGRNRLVS
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