| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0256 |
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| Symbol | |
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| ID | 4174003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 297866 |
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| End bp | 300202 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638053255 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_659842 |
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| Protein GI | 109896587 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCCACTA GAAAGCTAAA CCAAAGCATA TTCCGCCTTG TTGTAGGTTT GGTTGTACTC
ACCGCCACCA TGATACTCAT CAATGTATGG ACCTCAACGA GCAAGCACGC ACAAAGCCAA
TTAAACAGTG ACCTTGAAGT CGCCCAAAAC GTTTTTGAGC AAGTATTAGA GAGTCGGGAG
GATGTGCTTT ACAACTCAGC AAGTGTATTG ACTGCTGATT TCGGCTTCAA ACAAGCCGTT
GCTTCAGGCG ATATTCCTAC GATCAACAGC GCATTGTATA ACCATGGCGG GCGGATCACC
GCCGATTTGA TGGCGCTAGT TTCTCTCGGC GGCAACAACA TCACCAGCGT TCCGAATATT
CTGCCGACAG AAACTCCCTT TCCTTATTCA AAAATAATAC AAAATGCCTT ACTAAACGGT
GGTGCTGCGG CGCTGCTACT TATCGATAAC AAGTTGTACC AAGTAATGAT GCTGACTATC
GATGCGCCGA CCCCGATTGC CGTCGCCGTC ATTGGATTTG AGATAGACCA TGGATGGGCG
CAACAGCTCA AAGATGTCAC TCAGTTGGAT ACCACCATAC AAGTGCAAGC GGATGGAGAA
AATAACCTCA CCATCAGTAC CTTGCACAGT GAAATGTTAG AGGTAGCTTT AGCAGAGCAG
GGACAGACTT TGTCTTGGCT TTCACTGACG TTGTTTAACG ATGCACCTTT TGTATCTCGG
CAGTTTTTGT TGGAGGAAGA AGGCGATTTT AAAGTAATGA TTACGCTGTC GAATGATCTT
CATCGTCTAT TTGCCGATTT TAACGCTTTG CAGCTGAATA TCTTGTTCAT AGCGTTACTA
GCAATTATTT TGGCGTTATG TTTTGCAGCG TTATTTTCCC GTAAAGTCGC TAAACCATTG
GTTGCGCTTG CGGATACAGC CCAGCGCATT TCTACCGGTG ACTACAATAA GACAATCGTT
GCTCACTCTA ACTCGACCGA AGTAACAAAC TTAGCCCAGG CATTGGAATC AATGCAATCT
AACATTCGCC ATCGTGAAGA AAAAATAAGC TATCAAGCAC AGCACGATAT ACTGACTGGT
TTGAATAATC GCTACAATAT GGAAGCGCTA CTTTGCGCTA AATTCAAAGA AAACAAACCC
TTTCAGGTGT TAGGCATTAA CGTGTTTGGT TTTCGAAGTA TTAACGACGT CTTTGGTTAT
CACAATGGCG ATATTTGCCT GCAAATACTT GCCAATCGAC TACTCGAACA TGGTGGGATA
GGTGCTAGAT TAGCAGGTGG GGAGCTACTT TGGGTGCCTG ATGAGCACCT CTCACAAAAA
CAGGTCGTAC AATTTATAAA TAGCTTAGAG CAACCCATTG ATACGGGTGA TTCATCCATT
ATGGCCAAGT TATCCATAGG CATGCTGAAT TGCCCAAATG ACGCGACCAA TGCCGAAGAG
CTTTTCAGGC GTATCAATAT CGCACTCGAT GAAACGAAAC TGTCAGATCA GCCAATACTT
GCCTACCAAC CGGAGTTTGA ACATCGTTAT CTTCGCCGCC TATCAATTAT TGCCGAGCTT
AAAACTGCTT TGCAAGAGCA GCAAGATGAG TTGAGCCTTT TTTATCAACC TAAGTTAGAT
TTAGACACAG GTAAAGTCAC TAAGGTAGAA GCCTTGATTC GTTGGAACAA TGCCATACTG
GGCTTTGTTT CCCCTGAAGA TTTTATCAGC GTTGCCGAGC AAGCTGGGTT TATAGGAAAA
ATTACTGACT GGGTTATCAA TCAAGCCATA AAAGACGCGG TTGCCCTCAG AAATGCTGGT
ATTGAGATGA GTATCGCCAT CAATCTATCA GCGAAAGACG TGATGGATCA GGCCTTATTG
CCTCATATAT CCTCGCTCAT GGAGGCAAGC CAATTAAGCA GTAAAGCTTT GAGTTTTGAG
ATGACAGAGA GTGATTTGGT GCAAGAGCCT GCAAAAGCAA TTCAACAGTT GCAAGCGTTT
AGAGATAAAG GCTTTGAGAT AGCGATTGAT GATTTCGGCA CCGGTTACTC ATCCATGGCG
TATTTACAAT ATTTGCCTGT CACTACTTTA AAAGTGGACA AAAGCTTTGT CCTATCTCTT
GATTCTCAGC AAGGTGACCA AAAAATCGTG CAAACCGTTA TCGATTTAGC CCACAGCTTC
GGTTTGAATG TGGTGGCCGA AGGCATAGAA AGTCAAGCGA CACTCCTTTT GTTGAAGAAA
TGGGGTTGCG AGTTTGCTCA AGGGTATTAC ATGTGTAAAC CCATCCCATT CGACGACTTA
ATCACTTGGC ATAACACCCA CCAATTAACT AACTGGTTTG AAAAAGATGC TACATAA
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| Protein sequence | MATRKLNQSI FRLVVGLVVL TATMILINVW TSTSKHAQSQ LNSDLEVAQN VFEQVLESRE
DVLYNSASVL TADFGFKQAV ASGDIPTINS ALYNHGGRIT ADLMALVSLG GNNITSVPNI
LPTETPFPYS KIIQNALLNG GAAALLLIDN KLYQVMMLTI DAPTPIAVAV IGFEIDHGWA
QQLKDVTQLD TTIQVQADGE NNLTISTLHS EMLEVALAEQ GQTLSWLSLT LFNDAPFVSR
QFLLEEEGDF KVMITLSNDL HRLFADFNAL QLNILFIALL AIILALCFAA LFSRKVAKPL
VALADTAQRI STGDYNKTIV AHSNSTEVTN LAQALESMQS NIRHREEKIS YQAQHDILTG
LNNRYNMEAL LCAKFKENKP FQVLGINVFG FRSINDVFGY HNGDICLQIL ANRLLEHGGI
GARLAGGELL WVPDEHLSQK QVVQFINSLE QPIDTGDSSI MAKLSIGMLN CPNDATNAEE
LFRRINIALD ETKLSDQPIL AYQPEFEHRY LRRLSIIAEL KTALQEQQDE LSLFYQPKLD
LDTGKVTKVE ALIRWNNAIL GFVSPEDFIS VAEQAGFIGK ITDWVINQAI KDAVALRNAG
IEMSIAINLS AKDVMDQALL PHISSLMEAS QLSSKALSFE MTESDLVQEP AKAIQQLQAF
RDKGFEIAID DFGTGYSSMA YLQYLPVTTL KVDKSFVLSL DSQQGDQKIV QTVIDLAHSF
GLNVVAEGIE SQATLLLLKK WGCEFAQGYY MCKPIPFDDL ITWHNTHQLT NWFEKDAT
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