Gene Patl_0252 details

Gene Information

• Locus tag: Patl_0252
• ID: 4173999
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 294077
• End bp: 295885
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638053251
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_659838
• Protein GI: 109896583
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.810621
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCCCG CTACAAGCGC TATCAACAGC GCCCAATCCG TTTTGAAAAC GGTTTTCGGT 
TATGATGAAT TTCGTGACGG TCAGCGCGAC GTTATCGAAA AGATATTACA AGGTCACGAT 
GTCTTAGTCC TTATGCCTAC GGGAGGAGGG AAATCACTTT GTTACCAAAT ACCAGCTTTG 
GTGCTTGAGG GGTTAACCAT TGTTGTCTCA CCTCTTATCG CTCTTATGAA AGACCAAGTA 
GACGCTCTTG TCGCATCAGG GGTCAGTGCG GCTTATATTA ATTCAAACCT CAGCAGCGAA 
GAAATACACA ATGTTTATCG CGGCATGCAA GATGGTCATT ACAAACTCAT TTATGTCGCC 
CCTGAGCGCT TGATGCAATT TGATTTTATT CAGCGCTTAC ATAGTCTAGA ACTCGCCCTT 
TTTGCCGTTG ATGAAGCCCA CTGCGTTTCA CACTGGGGTC ACGACTTTCG TAAAGAGTAC 
CGTCGGCTAG GTCAATTAAA ACAACAGTTT CCTACTGTTC CAGTGGTGGG GCTGACCGCT 
ACGGCAGATA TCACAACGCG CAGTGATATC TTGCAGCAAC TCGCCCTACA GGATCCGTTC 
ATTTTTAAGG GCAGCTTTGA CAGGCCTAAT ATCCGTTACA ACCAATTGTT CAAATACAAA 
GCGACTGATC AGGTGATTCA GTACGTAAAA CAACAAGAAG GTAGCGGCAT CATATACTGT 
AACAGCCGCA AGAAAGTTGA TGATTTGAGT ATTGCTCTTG CCAGACAAGG TATCAACTGT 
GCCGGTTACC ATGCCGGCCT TGAAGGCCCG ATACGAGACA AAATCCAACG GGACTTTATT 
CAAGATAACA TCGACATCAT TGTGGCCACT GTCGCATTTG GTATGGGGAT CAATAAATCC 
AATGTGCGCT TTGTAGTTCA TTTCGATTTG CCACGTAGCG TGGAAGCCTA TTACCAAGAA 
ACAGGGCGCG CCGGGCGAGA CGGTATGCCG GCAGAAGCAT TACTTTTGTT TGATGAAAAA 
GATGCTGCAC GGATACGCCA ATGGATTGGT ATGGGTGATA ACCCCGAACG TCTAGATATC 
GAATTGCAAA AATTTGCCGC TATGGAGGCG TTCGCAGAGG CTCAGACCTG TAGGCGACAA 
GTCTTACTCA ATTACTTTTC CGAGTACTCT GCCCATGACT GCGGTAACTG TGATATTTGC 
CTCGATCCGC CGAAGCGATT CGATGGGACT GTGCCGGCGC AGATGGTGCT GTCGTGTATT 
TATCGTTTGG GACAGAATGT CGCCAGCCAA TATGTCATTG ATGTATTACG TGGCAAAAAG 
CTCAAACGCA TTGTTGAGCA AGGTCATGAT AGCCTCAGTA CGTTTGCTAT TGGTAAAGAT 
AAGTCTGATG CGCACTGGCA CAATATAATT AATCAGCTGA TCCATAAAGG TTTTCTGCGC 
ATCGACATTA CACAAAGCGC CGTGCTTAAA CTAACTGAGG AAGCCAGGGG TGTCCTCGCA 
GGTAAATTAG AACTGGCGTT AGCGGTGCCG CGTCTGACAA TTGATTCAGG TAAAAAATCA 
AAGCTCAAAG AGATGAACTA CGATCGTAAA TTGTTTGCCA AGTTAAAGCA TTTACGAAAG 
TCCATTGCGC AAAGGGAAGA TGTGCCGCCA TTCGTCGTTT TCAGCGACGC AACTCTGGCA 
GACATGGCCG ATAAGCTGCC CCAGTCCAAA ACCGACTTTT TAGAGGTCAA TGGGGTTGGT 
CAAACCAAGC TAGACCGTTA TGGCAGCGAG TTTCTAGCTG CAATATCTGC TTATTCGCAA 
GATTTGTAG 

 

Protein sequence

MPPATSAINS AQSVLKTVFG YDEFRDGQRD VIEKILQGHD VLVLMPTGGG KSLCYQIPAL 
VLEGLTIVVS PLIALMKDQV DALVASGVSA AYINSNLSSE EIHNVYRGMQ DGHYKLIYVA 
PERLMQFDFI QRLHSLELAL FAVDEAHCVS HWGHDFRKEY RRLGQLKQQF PTVPVVGLTA 
TADITTRSDI LQQLALQDPF IFKGSFDRPN IRYNQLFKYK ATDQVIQYVK QQEGSGIIYC 
NSRKKVDDLS IALARQGINC AGYHAGLEGP IRDKIQRDFI QDNIDIIVAT VAFGMGINKS 
NVRFVVHFDL PRSVEAYYQE TGRAGRDGMP AEALLLFDEK DAARIRQWIG MGDNPERLDI 
ELQKFAAMEA FAEAQTCRRQ VLLNYFSEYS AHDCGNCDIC LDPPKRFDGT VPAQMVLSCI 
YRLGQNVASQ YVIDVLRGKK LKRIVEQGHD SLSTFAIGKD KSDAHWHNII NQLIHKGFLR 
IDITQSAVLK LTEEARGVLA GKLELALAVP RLTIDSGKKS KLKEMNYDRK LFAKLKHLRK 
SIAQREDVPP FVVFSDATLA DMADKLPQSK TDFLEVNGVG QTKLDRYGSE FLAAISAYSQ 
DL