| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0245 |
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| Symbol | |
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| ID | 4173992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 287391 |
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| End bp | 288458 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053244 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_659831 |
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| Protein GI | 109896576 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCGT TAAAAAACGA TCGTTATCTA CGCGCTTTAC TTCGCCAACC AGTCGATGTC
ACCCCTGTGT GGATGATGCG CCAAGCAGGC CGTTATTTGC CTGAGTATAA AGCAACGCGC
GCGCAAGCCG GTGATTTCAT GTCATTGTGT AAAAATGCAG AGTTGGCATG CGAGGTGACG
CTACAACCTC TTCGTCGCTT TGATTTAGAC GCCGCTATAC TGTTTTCTGA CATACTCACT
ATCCCAGATG CAATGGGCTT AGGATTGTAT TTCGAGCAAG GGGAAGGCCC GAAATTCTCT
AAACCAATTA CATCTATGGC GGACATCCAA AATCTACCCG CACCGGATCC TGAGCAAGAA
CTGCAATATG TGATGAATGC AGTGCGTACC ATTCGTAAAA ACTTGCAAGG TGAAGTACCA
CTTATTGGTT TCTCTGGCAG CCCCTGGACG CTAGCCACTT ACATGATTGA GGGCGGTTCC
AGCAAGGCGT TTACTAAGAT TAAAAAGATG GCGTTTAGCG ATCCTCAAGC GCTGCATTTA
TTACTCGATA AACTCGCTGA CTCTGTCATT TTATATCTTA ATGCTCAAAT CGATGCTGGC
GCTCAATCCG TCATGGTGTT TGATACTTGG GGCGGTGTAT TATCGCCTCG CGACTATCAA
GACTTTTCAC TGCAATATAT GCATAAAATT GTTGATGGGT TAACCCGTGA AAATGATGGG
CGTAAAGTAC CTGTCACCTT ATTCACCAAA AACGCTGGTA TGTGGTTAGA GTCCATAGCC
GCGACGGGTT GTGATGGAGT AGGCTTAGAT TGGACTATCG ATATCGACAA CGCTAAAGCC
CGCGTGGGTG ATAAGGTTGC TTTACAAGGT AATATGGACC CATCCATGCT TTATGCCGCA
CCAGAGCGGA TAGAGCAAGA AGTACAGAAA ATACTAGCAG GATTCGGTGA AGGCCCAGGG
CACGTGTTTA ATTTAGGGCA CGGCATTCAT TTAGATGTTC CCCCCGAAAA CGCTAAAGTA
TTTGTCGACG CAGTGCATAA ATACAGTGCT CAGTATCACA AAGGCTAA
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| Protein sequence | MNSLKNDRYL RALLRQPVDV TPVWMMRQAG RYLPEYKATR AQAGDFMSLC KNAELACEVT
LQPLRRFDLD AAILFSDILT IPDAMGLGLY FEQGEGPKFS KPITSMADIQ NLPAPDPEQE
LQYVMNAVRT IRKNLQGEVP LIGFSGSPWT LATYMIEGGS SKAFTKIKKM AFSDPQALHL
LLDKLADSVI LYLNAQIDAG AQSVMVFDTW GGVLSPRDYQ DFSLQYMHKI VDGLTRENDG
RKVPVTLFTK NAGMWLESIA ATGCDGVGLD WTIDIDNAKA RVGDKVALQG NMDPSMLYAA
PERIEQEVQK ILAGFGEGPG HVFNLGHGIH LDVPPENAKV FVDAVHKYSA QYHKG
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