Gene Patl_0243 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0243 
Symbol 
ID4173990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp285140 
End bp286486 
Gene Length1347 bp 
Protein Length448 aa 
Translation table11 
GC content46% 
IMG OID638053242 
ProductUDP-N-acetylmuramate 
Protein accessionYP_659829 
Protein GI109896574 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0773] UDP-N-acetylmuramate-alanine ligase 
TIGRFAM ID[TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.23564 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATCTAC ATATTTTAGG TATTTGCGGG ACGTTTATGG GCGGCATTGC GGCAATAGCT 
AAAGCGATGG GTCATAAGGT TACCGGTTCT GATAATAATG TTTACCCGCC AATGAGTACG
CAGCTCGAGG CACTAGGCAT TGAGCTAACC CAAGGTTTCG GTGAAGACCA GTTTGATCCA
CAGCCTGACA TGGTGGTGAT CGGCAACGCG CTTTCTAGGG GCAATCTTGC AGTTGAATAC
GTACTCAACA GAGGAATTCC CTATACTAGT GGCCCGCAAT GGTTATTGGA AAATGTTCTT
AAAGACCGCT GGGTATTAGC GGTCTCAGGT ACCCATGGCA AAACCAGCAC ATCAAGTATG
TTGGCGTGGA TATTAGAATC TGCGGGAATG TCACCTGGTT TTTTGATTGG TGGTATTCCA
CAGAATTTTG ATATTTCTGC TCGTTTGGGT GAAACGCCGT TTTTTGTTAT CGAAGCAGAT
GAATACGACA GTGCCTTTTT CGATAAACGT TCGAAGTTTG TTCACTATCG TCCTCGTACG
CTAGTGATTA ACAATATCGA GTTCGACCAC GCTGATATAT TTGATAGCAT CGCAGATATT
CAAAAGCAGT TTCATCATCT TATCCGAATG ATACCCGGAA ACGGATTGGT GATTGCGCCA
AAGACAGATA ACCAGATTAC ACAAGTGCTA GATAAAGGTT GTTGGTCGCC AGTGCAATTT
GTGGGTAGCG ATTGGAAAGC AGAAAACGGC TCTGCAGATG GCGGTGAGTT TGATGTGATC
TATAAGGGTA AGTCCTTTGG TAGGGTGAAA TGGTCGCTGT TAGGCCTGCA CAATGTACAA
AATGCCATGA TGGCCATTAT TGCTGCTCGT CACGCAGGTG TGTTACCTGA AGTGGCTATT
GAGGCGTTAG GCAGTTTTGT GAATGCCAAA CGACGTATGG AGATATTAGG CACTGTCAAT
GGCATCACGG TGTACGATGA TTTCGCACAT CATCCCACCG CTATTGCTAC AACCCTGGAA
GGACTGCGAG CAAAAGTAGG CGATGCCCGT ATTTTAGCGG TGCTTGAGCC TCGCTCAAAC
ACAATGAAGA TGGGTGTACA TAAGCAAACA CTCGCGAAGT CTTGGTCTGC GGCGGACCAA
GTTTTCATTT ATGAGCCAAG TAACCTTAGT TGGTCAATGG ATGCGCTATT GGCGCAAAGT
GAGGTAACGG CATCACTGCA CAATGACTTG AACATATTAG AAAAGTCTAT TTTGTCTTAC
GTTCAGCCTG GCGATCACGT GTTGATTATG AGTAATGGTG GATTTGGTGG TATACACCAG
CGGCTATTAC AAAAACTGTC ACAGTAG
 
Protein sequence
MHLHILGICG TFMGGIAAIA KAMGHKVTGS DNNVYPPMST QLEALGIELT QGFGEDQFDP 
QPDMVVIGNA LSRGNLAVEY VLNRGIPYTS GPQWLLENVL KDRWVLAVSG THGKTSTSSM
LAWILESAGM SPGFLIGGIP QNFDISARLG ETPFFVIEAD EYDSAFFDKR SKFVHYRPRT
LVINNIEFDH ADIFDSIADI QKQFHHLIRM IPGNGLVIAP KTDNQITQVL DKGCWSPVQF
VGSDWKAENG SADGGEFDVI YKGKSFGRVK WSLLGLHNVQ NAMMAIIAAR HAGVLPEVAI
EALGSFVNAK RRMEILGTVN GITVYDDFAH HPTAIATTLE GLRAKVGDAR ILAVLEPRSN
TMKMGVHKQT LAKSWSAADQ VFIYEPSNLS WSMDALLAQS EVTASLHNDL NILEKSILSY
VQPGDHVLIM SNGGFGGIHQ RLLQKLSQ