Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0243 |
Symbol | |
ID | 4173990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 285140 |
End bp | 286486 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053242 |
Product | UDP-N-acetylmuramate |
Protein accession | YP_659829 |
Protein GI | 109896574 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.23564 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATCTAC ATATTTTAGG TATTTGCGGG ACGTTTATGG GCGGCATTGC GGCAATAGCT AAAGCGATGG GTCATAAGGT TACCGGTTCT GATAATAATG TTTACCCGCC AATGAGTACG CAGCTCGAGG CACTAGGCAT TGAGCTAACC CAAGGTTTCG GTGAAGACCA GTTTGATCCA CAGCCTGACA TGGTGGTGAT CGGCAACGCG CTTTCTAGGG GCAATCTTGC AGTTGAATAC GTACTCAACA GAGGAATTCC CTATACTAGT GGCCCGCAAT GGTTATTGGA AAATGTTCTT AAAGACCGCT GGGTATTAGC GGTCTCAGGT ACCCATGGCA AAACCAGCAC ATCAAGTATG TTGGCGTGGA TATTAGAATC TGCGGGAATG TCACCTGGTT TTTTGATTGG TGGTATTCCA CAGAATTTTG ATATTTCTGC TCGTTTGGGT GAAACGCCGT TTTTTGTTAT CGAAGCAGAT GAATACGACA GTGCCTTTTT CGATAAACGT TCGAAGTTTG TTCACTATCG TCCTCGTACG CTAGTGATTA ACAATATCGA GTTCGACCAC GCTGATATAT TTGATAGCAT CGCAGATATT CAAAAGCAGT TTCATCATCT TATCCGAATG ATACCCGGAA ACGGATTGGT GATTGCGCCA AAGACAGATA ACCAGATTAC ACAAGTGCTA GATAAAGGTT GTTGGTCGCC AGTGCAATTT GTGGGTAGCG ATTGGAAAGC AGAAAACGGC TCTGCAGATG GCGGTGAGTT TGATGTGATC TATAAGGGTA AGTCCTTTGG TAGGGTGAAA TGGTCGCTGT TAGGCCTGCA CAATGTACAA AATGCCATGA TGGCCATTAT TGCTGCTCGT CACGCAGGTG TGTTACCTGA AGTGGCTATT GAGGCGTTAG GCAGTTTTGT GAATGCCAAA CGACGTATGG AGATATTAGG CACTGTCAAT GGCATCACGG TGTACGATGA TTTCGCACAT CATCCCACCG CTATTGCTAC AACCCTGGAA GGACTGCGAG CAAAAGTAGG CGATGCCCGT ATTTTAGCGG TGCTTGAGCC TCGCTCAAAC ACAATGAAGA TGGGTGTACA TAAGCAAACA CTCGCGAAGT CTTGGTCTGC GGCGGACCAA GTTTTCATTT ATGAGCCAAG TAACCTTAGT TGGTCAATGG ATGCGCTATT GGCGCAAAGT GAGGTAACGG CATCACTGCA CAATGACTTG AACATATTAG AAAAGTCTAT TTTGTCTTAC GTTCAGCCTG GCGATCACGT GTTGATTATG AGTAATGGTG GATTTGGTGG TATACACCAG CGGCTATTAC AAAAACTGTC ACAGTAG
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Protein sequence | MHLHILGICG TFMGGIAAIA KAMGHKVTGS DNNVYPPMST QLEALGIELT QGFGEDQFDP QPDMVVIGNA LSRGNLAVEY VLNRGIPYTS GPQWLLENVL KDRWVLAVSG THGKTSTSSM LAWILESAGM SPGFLIGGIP QNFDISARLG ETPFFVIEAD EYDSAFFDKR SKFVHYRPRT LVINNIEFDH ADIFDSIADI QKQFHHLIRM IPGNGLVIAP KTDNQITQVL DKGCWSPVQF VGSDWKAENG SADGGEFDVI YKGKSFGRVK WSLLGLHNVQ NAMMAIIAAR HAGVLPEVAI EALGSFVNAK RRMEILGTVN GITVYDDFAH HPTAIATTLE GLRAKVGDAR ILAVLEPRSN TMKMGVHKQT LAKSWSAADQ VFIYEPSNLS WSMDALLAQS EVTASLHNDL NILEKSILSY VQPGDHVLIM SNGGFGGIHQ RLLQKLSQ
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