| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0237 |
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| Symbol | |
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| ID | 4171724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 279656 |
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| End bp | 280354 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053236 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_659823 |
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| Protein GI | 109896568 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATGATGT GTAAGCCAGC TCTCGCCCCT ACTTACCAAC TTGTTTCACC TGCAGGATGT
TTAAACGCTT CAGTAAAGCG TAGGGCAGAG CACGGCTTCA CCTTGTTAGA GATTCTTATT
GCCATGGCGA TTTTTACCTT AATTGGTATC GCCAGCACAG GTGTACTGAC AAGCGTAATC
GATAGCGATG AGCTCTCCAC GGAACGTTTT GAGAAACTAC AAACATTGCA GCGAGCAATG
CTGACACTTG AGCGTGATAT ATTACAGGCT GTTGCGCGTC CCGTTAGAGT GGAGGGCGAA
GCGAATGGGC GCGTCATGCT AGGTGGTGAC GGGGTGTTAG ACAGCTATCA TGACGGGTTA
GTTTTTGTGC ATGGCGGCTG GCATAATCCG CAGCTACGCT TGCCTCGTAG CACATTACAA
GGTGTGGGTT TTCGGGTGCA GGAGCGCCAA TTACAGCGTT TGTACGGCAA CTATGTGGAT
AATGTTATTG GCTACGAGCC CAAAGTGAAA GTGCTACTCG AGAACATTGA TGATTTTAAA
GTGTATTTTA TACCGGTTGA TGAGGATGAG GAGGGCGACT CTGCGTGGCA AGATGATTAC
AGCGATGAGG TTTTGCCTAA GGCTGTCGCC ATAGAAATTA CCAGTCAAGA CTTTGGGCTA
ATTCGCCGTG AGTTTTTGTT ATCAGGCGCG AGTTCATGA
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| Protein sequence | MMMCKPALAP TYQLVSPAGC LNASVKRRAE HGFTLLEILI AMAIFTLIGI ASTGVLTSVI
DSDELSTERF EKLQTLQRAM LTLERDILQA VARPVRVEGE ANGRVMLGGD GVLDSYHDGL
VFVHGGWHNP QLRLPRSTLQ GVGFRVQERQ LQRLYGNYVD NVIGYEPKVK VLLENIDDFK
VYFIPVDEDE EGDSAWQDDY SDEVLPKAVA IEITSQDFGL IRREFLLSGA SS
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