| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0236 |
|---|
| Symbol | |
|---|
| ID | 4171723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 279274 |
|---|
| End bp | 279669 |
|---|
| Gene Length | 396 bp |
|---|
| Protein Length | 131 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638053235 |
|---|
| Product | general secretion pathway protein I |
|---|
| Protein accession | YP_659822 |
|---|
| Protein GI | 109896567 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR01707] general secretion pathway protein I
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTCAC TTGCCGGAGG CTGCCATCAA AAGGGTATGA CACTGCTAGA GGTGATGGTT
GCCTTAGTGA TCTTTGCCAT GACAGCCACC GCGATAATGA AGGCCGCGAG TGATCACCTG
GGCAGTATTG GCCAAATTGA AGAAATTACC TTTGCTACTT GGGTGGCGAA TAATCGCCTG
ACACAACTAC AGTTATCGAG CCAGTGGCCC CCAAAAGATA ATGCCAAAGG GGAGCAAACC
ATGGCAGACC GCACATGGTA TTGGCAGCAA AAAGTCATCA AAACGAATGA TAGCGAGCTT
ATGTCGGTGG AGGTGAGCGT TGCCCTTGAC GCGAAGTTAT CTGCGCCAAT CACATCTGTG
GTGACCTTTG TAGCTAAGCG AGATGATGAT GTGTAA
|
|---|
| Protein sequence | MRSLAGGCHQ KGMTLLEVMV ALVIFAMTAT AIMKAASDHL GSIGQIEEIT FATWVANNRL
TQLQLSSQWP PKDNAKGEQT MADRTWYWQQ KVIKTNDSEL MSVEVSVALD AKLSAPITSV
VTFVAKRDDD V
|
|---|
| |