| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0233 |
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| Symbol | |
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| ID | 4171720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 276966 |
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| End bp | 278186 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053232 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_659819 |
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| Protein GI | 109896564 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCGT TTGCATATAA AGCGATTGAT AAAAGCGGTA AAAATAAAAG TGGCGTACTA
GAAGGTGACA ATGCTCGCCA AATACGTCAG CAACTGCGTG AAAAGCAACT TATTCCGCTA
GAAGTCGAAC AAGTCGCGGA AAAGGAGCGC CAGTCCGCCA AACAGTTTTC ATTGTTCAAA
CCGAAAATTT CTGCCTCTGA TTTAGCCTTG TTAACGCGTC AGTTAGCGAC TTTGGTAGAG
TCCTCTTTGC CCATTGAAGA AGCGTTAATG GCTGTGGCGC AGCAATCTGA AAAACCTCGC
CAGAAAAACA TGATGATGGC GGTACGCAGT AAAGTGGTAG AGGGATACAA CTTAGCGGAT
GCCATGGCGG AATTCCCTCA CGTATTTGAT GAGCTGTTCA GAGCTATGGT CGCAGCGGGT
GAAAAGTCTG GCCACTTAGA TACGGTGCTT AATCGCTTAG CGGATTACAC TGAGAAGCGT
CAACAAACCC GCAGCCAAAT AACCCAAGCC ATGGTTTACC CTACGCTTAT GATGTTTTTT
GCCATGGGAA TAGTGATCTT ATTACTCACC GTGGTGGTGC CGAAAATTGT CGGCCAATTT
GATCACATGG GGCAAGATTT GCCCACCATT ACTAAGGTGC TGATCAGCGT CAGTGAATGG
ATGCAAAACT ACGGTTTACT ATTGATTGTG ATTTTTGCAT TGGCGGCTGT TGTTCTAAGT
CGCGTGCTGC AACAACCTGC GATGAAAAAA CGCTACCATC ATTTTATTCT AGGTTTACCC
TTATTGGGAA AGGTCTCTAA AGGGTTAAAT ACTGCACGCT TTGCTCGAAC ATTAAGTATT
CTGACCTCTA GCTCGGTGCC TTTACTTGAG AGCATGAAAA TTTCCAGTGA TGTGTTGGCG
AACTTGTACA TTCGAGACGA GGTCAAAGGT GCATCAGTCA ATGTAAAAGA AGGTTCAAGC
CTGCGTGCGG CTCTAGAGCG TACCAAAATG TTTCCACCCA TGATGATGCA TATGATTGCA
TCGGGGGAGC GTAGTGGTGA GCTGACGCAA ATGTTAGGGC GCGCAGCGGA CAACCAAGAC
AGAGAGTTTG AATCCTTGGT TGGGGTATCT TTGAAAGTGT TCGAGCCTCT TTTAATTGTC
TCTATGGCGG GTATTGTGCT GTTTATCGTA ATGGCCATCC TGCAACCTAT TTTAGCTTTA
AACAACATGG TGAATCTTTA A
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| Protein sequence | MAAFAYKAID KSGKNKSGVL EGDNARQIRQ QLREKQLIPL EVEQVAEKER QSAKQFSLFK
PKISASDLAL LTRQLATLVE SSLPIEEALM AVAQQSEKPR QKNMMMAVRS KVVEGYNLAD
AMAEFPHVFD ELFRAMVAAG EKSGHLDTVL NRLADYTEKR QQTRSQITQA MVYPTLMMFF
AMGIVILLLT VVVPKIVGQF DHMGQDLPTI TKVLISVSEW MQNYGLLLIV IFALAAVVLS
RVLQQPAMKK RYHHFILGLP LLGKVSKGLN TARFARTLSI LTSSSVPLLE SMKISSDVLA
NLYIRDEVKG ASVNVKEGSS LRAALERTKM FPPMMMHMIA SGERSGELTQ MLGRAADNQD
REFESLVGVS LKVFEPLLIV SMAGIVLFIV MAILQPILAL NNMVNL
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