| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0231 |
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| Symbol | |
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| ID | 4171718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 273315 |
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| End bp | 275384 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053230 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_659817 |
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| Protein GI | 109896562 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTA TCCAGCGAAC AAGCCGTAAT ATTTTACCCA GCTTGTGCCT TATTATTGGG
GCCGCATTTT TCTCTGCGTC AACTTTTGTA GCAGCCAACG AATACTCACC TAACTTTAAA
AATACTGATA TCGGTGAATT CATTAATATT GTGGGTAAAA ACCTCAAAAA GACCATCATT
GTTGACCCCA ATGTGCGCGG CAAGATATCT GTTCGCAGTT ACGATCTGTT AAACGAGGAA
CAGTATTACC AATTCTTTTT AAACGTATTG CAAGTGTATG GCTATGCCGT GGTTGAAATG
CCGACGGGTA TAGTCAAAGT GGTACGTTCA AAAGACGCAA AAACATCAAA CTTGCCCGTT
GTTGAGGGCA CACCGTTTGA CGGGGATGAA ATGATTACCC GGGTAATGCC AGTGTATAAC
GTACCGGTAC GTGAACTTGC TCCTATTTTG CGTCAACTAA ATGACCAAGC AGGCGGCGGC
AATGTCGTTA GCCATGATGC ATCAAACGTA ATGATGCTAA CGGGGCGAGC TGCAGTGGTA
AATAGGTTGG TGGAAATCAT TGAGCGGGTA GATAAAGCCG GCGATGAAGA AGTGGAAATC
GTGAAGCTAA AATTCGCCTC GGCCACAGAG TTAGTACGCA TCATCGAGAG CATTAATAAA
ACCACGGGTA AAGCCAGCGC AAGTGGCAAA GATGCTCCTC GCGTAGTGGC TGATGACAGA
ACAAACAGTA TTATGGTCAG TGGTGATATC AAAGCGCGCC AGCGTATCGT GAATCTGATT
GAACGCATGG ACCAGGAATT AGAAACCAGC GGTAACACGC GAGTTATCTT CCTTAAATAT
TCCAAAGCAG AAGAACTAGT CAAAGTATTG CAAGGGGTTA GTGCCAGCAT TCAAGCCGAA
GAGCAAGGTG CTGCGAAATC AACCAGTAAA GCGGCGCGTG ATATCAGTAT TGAAGCCCAC
GAAGATTCCA ATGCCCTCGT TATCACCGCC CAGCCAGATA TGATGCGTTC ATTAGAAGAC
GTTATCCGCC AACTAGATAT CCGCCGCGCA CAAGTACAAG TGGAAGCGAT AATCGTGGAA
GTGTTTGAAG GCGACGGCAC CACGGTTGGT GTGCAATGGG CAAGTGAAAA ATACGGTGCG
CAGCAGTTTA GCAATGGTAA CGTGGTAGGT ATTGGCTCAT TAGCCGTTGC CGCAGAACAA
GCAGAAGATA CAACGACAAC CACAGTTGGT TTTGATGATG ATGGCGACCC GTACTCATTT
GATGAAACAA CAGAAGGAGA CTACACCGCC CTTGCTTCAC TGCTTGGTGG CGTAAATGGT
TTCTTGGTGG GGGCAGTAAA AGATGGTTGG GGCGCAGTGC TGCAAGCGGT GAGCACAGAT
ACTAACTCGA ACGTACTGTC TACCCCGCAT TTAACGACCC TTGATAATGA AGAGGCCTTT
TTTATTGTGG GTCAAGAAGT ACCGATTATC ACAGGCTCCA CAACCGGTTC GAATAACACC
AACCCATTTC AGTCTGTAGA GCGTCAAGAA ATAGGTATTA AGCTTAAAGT TACCCCACAA
ATCAACGAAG GTAACGCAGT ACAACTGCTT ATAGAGCAAG AGGTATCAAG TATTAGCGGC
GCAACCTCAG TGGATATTCT GATCAACAAA CGTGAGATCA AAACCACCGT TATAGTGGAC
GATGGAGGCA CGATTGTACT GGGTGGATTA ATTGATGATG ATGTGCAAGA GAGCGTGTCT
AAGGTGCCTA TTTTGGGTGA TATCCCTTAT CTTGGAAACT TGTTTAAGTC GACTACTACC
AGTAAATCTA AACGTAATTT GATGGTGTTT ATTCGTCCTA CGATTATTCG CGATGGGGTA
ACAGCCAGCG ATATTAGTCG TAAAAAGTAC AATTACATTC GCGCTGAACA GCTTAAGCGC
CAGTCAGAGG GCATCCCGTT AATGCCATTT TCTGAAAACC CAGCGTTACC AGAATGGGAC
GATGGCTTAG CTTTGCCGCC TTCCTATGGC GAGTATATGG AAAAAAGAGC GCAATCTGAA
AAAGCCGCGC AGCAAAAGGA TGATGAGTAG
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| Protein sequence | MNFIQRTSRN ILPSLCLIIG AAFFSASTFV AANEYSPNFK NTDIGEFINI VGKNLKKTII
VDPNVRGKIS VRSYDLLNEE QYYQFFLNVL QVYGYAVVEM PTGIVKVVRS KDAKTSNLPV
VEGTPFDGDE MITRVMPVYN VPVRELAPIL RQLNDQAGGG NVVSHDASNV MMLTGRAAVV
NRLVEIIERV DKAGDEEVEI VKLKFASATE LVRIIESINK TTGKASASGK DAPRVVADDR
TNSIMVSGDI KARQRIVNLI ERMDQELETS GNTRVIFLKY SKAEELVKVL QGVSASIQAE
EQGAAKSTSK AARDISIEAH EDSNALVITA QPDMMRSLED VIRQLDIRRA QVQVEAIIVE
VFEGDGTTVG VQWASEKYGA QQFSNGNVVG IGSLAVAAEQ AEDTTTTTVG FDDDGDPYSF
DETTEGDYTA LASLLGGVNG FLVGAVKDGW GAVLQAVSTD TNSNVLSTPH LTTLDNEEAF
FIVGQEVPII TGSTTGSNNT NPFQSVERQE IGIKLKVTPQ INEGNAVQLL IEQEVSSISG
ATSVDILINK REIKTTVIVD DGGTIVLGGL IDDDVQESVS KVPILGDIPY LGNLFKSTTT
SKSKRNLMVF IRPTIIRDGV TASDISRKKY NYIRAEQLKR QSEGIPLMPF SENPALPEWD
DGLALPPSYG EYMEKRAQSE KAAQQKDDE
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