Gene Patl_0225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0225 
SymbolompR 
ID4171712 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp268013 
End bp268735 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content48% 
IMG OID638053224 
Productosmolarity response regulator 
Protein accessionYP_659811 
Protein GI109896556 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGACAAG AAACCACAAA AATTTTAGTA GTAGACGATG ATATGCGTTT ACGCAGCTTG 
CTTGAACGCT ATTTGGTTGA GCAGGGTTAT CAGGTGCGAG CGGCTGCCAA TGCAGAACAA
ATGGATCGCA TGCTAGAACG TGAGAATTTC CATTTGATGG TACTTGATTT GATGTTGCCT
GGGGAAGATG GCTTGTCTAT TTGCCGCCGC TTACGTCAAA AAGAAAATGA AATTCCTATT
GTGATGCTAA CGGCCAAAGG CGATGAAGTT GATCGTATTA TCGGTCTTGA AATGGGCGCA
GATGATTATT TACCCAAGCC CTTCAACCCT CGTGAGTTAT TGGCTCGGGT GAAAGCGGTG
TTACGCCGAA AAGTCGTTGA AGCACCTGGT GCGCCGTCTC ACGCTGAGCA AATTGTTGAG
TTTGGCAAGT TCAAATTGAA TTTGGGCACG CGTGAAATGT CGAGTGAAGG TACGCCAATG
ACATTGACCA GTGGCGAGTT CGCTGTGCTT AAATCTTTGG TCACTCATCC TCGCGAGCCG
TTATCGCGGG ATAAATTAAT GAACTTAGCG CGTGGCCGTG ATTACAGTGC ACTCGAGCGT
AGCATCGACG TGCAAGTATC TCGTTTACGC CGCATGCTTG AAGAAGACCC TGCAAACCCG
CGTTATATTC AGACCGTATG GGGCCTAGGT TACGTTTTTG TACCAGACGG TGGTGGAGCC
TAG
 
Protein sequence
MGQETTKILV VDDDMRLRSL LERYLVEQGY QVRAAANAEQ MDRMLERENF HLMVLDLMLP 
GEDGLSICRR LRQKENEIPI VMLTAKGDEV DRIIGLEMGA DDYLPKPFNP RELLARVKAV
LRRKVVEAPG APSHAEQIVE FGKFKLNLGT REMSSEGTPM TLTSGEFAVL KSLVTHPREP
LSRDKLMNLA RGRDYSALER SIDVQVSRLR RMLEEDPANP RYIQTVWGLG YVFVPDGGGA