| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0203 |
|---|
| Symbol | |
|---|
| ID | 4171749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 243936 |
|---|
| End bp | 246038 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638053202 |
|---|
| Product | TonB-dependent receptor, plug |
|---|
| Protein accession | YP_659789 |
|---|
| Protein GI | 109896534 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.583502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCCC GCGCCATTTT TAGTACATTT GTTTTGTCCG TTATCGTTGC TCCACTCACT
CAAGCCCAAG AGTTGAAACC AATCGTTTAT ACGACTAACG CACCACTAGC CCATCCCAAC
CAAACACCAG AGCAATACGC TCAGGAAATG AAAACCACAG AAAAAAAGAA AGACACCCAT
AATAACGATC TTAATATTGA GGCTCACTCA GACGAACATG AGCATACCGA ACAGGTTGAA
AAAATTGTTG TTCAAGCCAC ACGCTCAGGG CGCATCGCCG ATGACCAGCC TATACGTGTG
GAACTTATCG ACAGAGAAGA AATAGAAGAA AAAGCAGCCA TGCGCCCGGG TAATATCTCA
ATGCTGGTCG CAGAAACAGG TGGCGTTCGA GTCCAAACCA CGTCCCCTGC CCTTGGCAGT
GCAAACATTC GGCTGCAAGG TCTGTACGGT CGTTATACTC AGTTGCTGGC AGACGGTTTA
CCCCTGTACG GTAACCAAGC ATCATCCATT GGCTTACTAC AAATTCCTCC GACTGATCTT
GGCCGGGTTG AAATTATCAA GGGCTCCGCA TCTTCCTTAT ATGGTGGCTC AGCATTAGGT
GGGGTAATTA ACCTCGTATC TCGAACGCCG GGAGATTCGC TCAACGGCGA AGCCTTACTC
AATGTAACCA CGCGCAATGG GCAAGACCTA ACCTCGTATG TGGAAAGCCC CCTAAGTGAC
GATGTGAAAG GCTCTCTTAC AGTAGGCGCT CATCATCAAA ACAAGGAAGA CATAGACGAT
GATGGTTGGA TAGATCTGCC CAGTTACGAG CGCTACACTG CCCGCCCTCG ATTGTTTTGG
GAAGGTGAAA ACGGTGAATC ACTTTACGCG ACGGCAGGTT TTATGACCGA GCAGCGCGAA
GGCGGCACCA TGCCTGGGGC AGTCGTTGCT GACGGCAACC CCTATGAACA AACCCAAGAC
TCCCAGCGTA TTGATGGCGG CTTGGTGTTC AATATGCCGA TGCTCGATAC GCTGACCCTC
AATGCCAGAG CCTCTGCTAT GGTGCAAGAT CACGACCATA CTTATGGTGT TCTGGCAGAA
GACGACAAAC ATGAAAGCTA CTTATTAGAA AGCAGTATTG CCGGTTATAG CGGTGCTGCT
GACTGGCTAG TGGGCTTAGC TTACCAAACA GAACAGTTCA CCTCTGAGAC CTATAACGAA
TTCGATTATA CCTACGAAGT ACCCGGCATA TTTACTCAGT TAGATTATGA ATGGAATGAG
CAACTGACTA CTTCAGTAAG CGCCCGTTTA GATGAGCACA GTGAATACGG CACGCAATTC
AGCCCTAGAA TATCGATGTT ATATCGCCCT GGTGATTTAA CCATAAGGGG TTCATATGGT
CAGGGTTATT TTGCCCCGAC ACCTTTTGTT GAAGAGATTG AAGCCGCTGG CTTATCACGC
CTCGAGCCCT TACAAAACTT GGAAGAAGAG CAGGCCGAAA CCGCATCACT GGATGTAACC
TATCGATTCG AGAGCATCGA AGCGAGTGTG ACAGCATTTG GCTCTAATGT TGAAAACGTG
ACTGAGTTAC AAGCCTTTTC ATCGAACAAC ACAAATGAAC TCGACAGAGT AAGACTCATA
AACGCCGAAG GCGAAACTCA GATCCGCGGC TCAGAAGTAT TAATAAGATA TTACTGGCGC
GACGTAAAAC TGACCGCAAG CTACCTATAC CTAGATGCAA CGGAAGTTTC ACCGGACAAC
AGCGGTAGAA GAGAGATTGC GCTCACTCCA AGGCATTCCG CAGGTTTTGT TGCCATGTGG
GAGCAACACG GAAACTTCAG GGTCGGCTTT GAAGCCTACT ACACCGGCCC GCAAAGGCTG
AACGACAACC CGTACATAGA CGAATCGAAT CCCTATTGGC ACTTAGGCCT CATGGGGGAA
ATCACGGTAG GCAGAGCCAG CTGGTTTATT AATTTAGAAA ACCTGTTAGA TGTAAAACAA
ACCGACGAGC ACCCGCTGTT ACTTCCATCC AGAGCAGCAA GCGGCCAATG GACCACAGAC
ATCTGGTCAA GAAACGACGG CTTTATTGCT AATGCCGGCG TTAGAGTGAA GTTCGGTAGC
TAG
|
|---|
| Protein sequence | MPSRAIFSTF VLSVIVAPLT QAQELKPIVY TTNAPLAHPN QTPEQYAQEM KTTEKKKDTH
NNDLNIEAHS DEHEHTEQVE KIVVQATRSG RIADDQPIRV ELIDREEIEE KAAMRPGNIS
MLVAETGGVR VQTTSPALGS ANIRLQGLYG RYTQLLADGL PLYGNQASSI GLLQIPPTDL
GRVEIIKGSA SSLYGGSALG GVINLVSRTP GDSLNGEALL NVTTRNGQDL TSYVESPLSD
DVKGSLTVGA HHQNKEDIDD DGWIDLPSYE RYTARPRLFW EGENGESLYA TAGFMTEQRE
GGTMPGAVVA DGNPYEQTQD SQRIDGGLVF NMPMLDTLTL NARASAMVQD HDHTYGVLAE
DDKHESYLLE SSIAGYSGAA DWLVGLAYQT EQFTSETYNE FDYTYEVPGI FTQLDYEWNE
QLTTSVSARL DEHSEYGTQF SPRISMLYRP GDLTIRGSYG QGYFAPTPFV EEIEAAGLSR
LEPLQNLEEE QAETASLDVT YRFESIEASV TAFGSNVENV TELQAFSSNN TNELDRVRLI
NAEGETQIRG SEVLIRYYWR DVKLTASYLY LDATEVSPDN SGRREIALTP RHSAGFVAMW
EQHGNFRVGF EAYYTGPQRL NDNPYIDESN PYWHLGLMGE ITVGRASWFI NLENLLDVKQ
TDEHPLLLPS RAASGQWTTD IWSRNDGFIA NAGVRVKFGS
|
|---|
| |